Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01970 ATGGCACCAACAAGGAAATCTAGAAGTGTGAATAAGCGGATTTCAAGTTCAAATGACAATTCCCCTGAGAAAGATGGAGTTAATTCAAATAAAAACAAGCAACGGAAAAAGTTGACTGATAAATTGGGATCTCAGTGGAGCAAGGAGGAACTAGAGCGGTTTTATGAAGCATATAGGAAGTATGGGAAAGACTGGAAGAAGGTGGCTACTGTTGTATGTAATAGATCCACTGAAATGGTAGAAGCTCTTTACATTATGAATCGGGCATACCTCTCTCTGCCAGAGGGGACGGCTTCTGTTGTTGGCCTCATAGCAATGATGACAGATCACTACAATGTGATGGAAGGGAGTGATAGTGAAAGGGAGAGCAATGATGCACCAGGATCTCGAAAACCTGTAAAACGAAAGCGTGAAAAAGTTCAGCATAGTGTCTCTAAAGATCAGTCTCATTCAATTGCTTCTAGTGATGATTGCCTCTCTATATTGAAGAAGAGACGCTTTGATGGTATCCAGCTCCAGCCTCATGCTGTTGGTAAAAGGACTCCTCGTGTCCCAGTATATAAGAAAGATGATACAAAAAATTATGTTTCACCTTATAGAAGAAGCCTGAAGTCGACTATTGATGCTAATGATGATGAAGTTGCACATGTTGTAGCTTTGGCATTAACTGAGGCAGCACAAAGAGGAGGCTCTCCCCAAGTTTCTCAAACACCAAGTAGAAGAGTAAAGCAAAAATCCTCTCCCGTCCAGAGCCGGGAAAGAAAGCACCAAATGTTAGAGACAGCTCGTGCCAAGTTTCATGATGTTTCTGTGGATGAAGAGTTCTTAGAAGGTAGTATAGAAAGCAGGGGAGCTGAAAATGGAGAATATGCCAGAGATAATAGTTCATTGATGGATATGGAAGGCACAGGCGCTGTTGAAGTTCTTCAGAAGGGAGGGAAGTTTTATAGAAAGAGAGAGAGGGTGGAAAATCTTGGAAATCATCAACTTGATGATGGTGGGGAAGCATGTAGTGGCACTGAAGAAGGACTTAGTTTTAGTTCACTAAAGGAAAAGGTTGATATTGAGGTTACTAATGAAAAACTTGAAAAATTCTCTCCAAAAAGTCAGAAGAAAAGAAACAAGAAACTCTTCTTTGGAGATGAAACCCCTGCCTTGAATGCGTTGCAAACTTTGGCTGATCTGTCTCTAATGATGCCAATATCTACAATGGAATCTGAATCATCTATCCAGTTGAAGGGCGAAAGAATGGTTGCTGATGAAGATAATAAGTTTGCTTTACCTGAAGCAACATCAAGCCATAAGAGACATAAACTTAAACACAGTGTGGTCCCTGAAATTGAGGTTTCAACCTCCAAAAAGTCTAAGATTGGAAAAGAATCGACAAAGGATACTAATGCTGTCTCTGAATCAAAAGTGCAACTTCCTTTCGCTGATACAACATGGAAAAGAAAGCGGAAATCTGTGGTTTCAAAGGTTGCAAATGCAAAGCTTGATTCTTATCCAAGTGGTCCCTTGAAAGATGAGGCCTTAGATGATGAGAACAAACCAGTGGTTAAAGGAAAACACACTAATCAGGTTTTTAGCCTACCAAAGCAATTGAAGACAGTTAAATCGTCAGAGAGTTCCTTGTGTAGTGATCAGAAAGATTTGACAGTATCAACTGCAGAAGTTCCACTTTTGAATGAAGTTAGTTTACCAACTAAACGAAGTAGACGTAAGATGATTTTACAGAGAACTTCCTTGCCCAAGGAAAAGTCTTCTGATTTCATATTGAAAAGTCAACCTAACAAGTACTCTACCCTAAAGGAAAAGCTTTCTAGTTGCTTGTCATCTAATATGGTTTGCAGATGGTTTATTTTTGAATGGTTTTATAGTGCAATTGATTATCCATGGTTTGCCAAAAGGGAATTCATGGAGTACTTAAATCATGTTGGACTAGGGAATATCCCAAGGTTAACTCGTGTTGAGTGGAGTGTCATTAAAAGTTCCCTTGGCAAACCCCGCAGGTTTTCTGAACACTTTCTACGTGAAGAAAGGCAAAAACTTGAACAGTATCGGGAATCAGTGAGGAAACATTACACTGAACTGCTGACTGGTGTTAGGGATGGACTTCCAACAGATTTAGCTAAACCATTATATGTTGGACAACGCGTAATTGCTCTTCATCCAAAAACAAGAGAGGTTCATGATGGTAGTGTGCTTACCGTTGACTATGACAAGTGCAGGATTCAGTTTGACCGTCCTGAATTAGGTGTTGAATTTGTAATGGATATTGATTGCATGCCTTTGAATCCATTAGATAATATGCCAGAAGCTCTAAGGAGGCATGTTGGTTCCCGAAAAGCCTCTTTCATGACTAAAGAGCCTCAAATTAATGGAAATTCAATTTTTGGGGGGTGTGAAATGCATTCCTCACCAGTGAAGGCAAAGGTTGCTACCATTGATAACCTCTGTGCACAAGCAGGTTGTGCTCAACCGTGTAAAGTGACACACCATCAAGCTAAGGAAGCTGATATACATGCACTTTCTGAACTAAAGCGTGCTCTAGATAAAAAGGAGACATTGTTAATGGAGCTTCGAAGTGCAAATAGCGACATATTGGAAAACCAAAATGGCATAGAATGCTTAAAAGATTCTGAGGTTTTCAAGAAGCATTACGCCACGGTACTGGTAGAGCTAAAGGAAGCCAGTGGACAGGTTTCTGATGCTATGCTACAACTGAGGCAACGCAATACTTACAGAGGAAACTCTGTGCCACCATGGATGAAGCCGCAAGCAAGTTTCAATGTTCATGATGATCTTCCCAATATGTTGGATAGTTCTCTAACACAAGAGTTAGGATCAACTGTTGTTCAAATTATTAAAGGATCCCGGCTAAGGGCACATGCAATGGTAGATGCTGCATTTCAGGCATTGTCTTTGACAAAGGAAGGTGATGATGCTTTCATGAAGATTGGGCAAGCATTGGATTCTATTAATCATCAGCAGTTGGCCTCCAAGTCTAGGATACCTGTGATCAGGTCTCAAGAGCAAGTGCATGCAAATGGCAGTTTTTATCATCATCATTCAACTTGCGGTGTATCGGAGCCAATTCTTAATGATCCATCGGATCCAAAACTACATAATTATTCTGAACTTCCGTCAGATCTTATCACTTCATGTGTCGCTACATTAATCATGATTCAGACTTGTACTGAAAGGCAATACCCTCCAGCTGATGTGGCTCAGATATTAGATTCTGCCGTTACCAGCATGCATCCATGCTGTCCTCAAAACCTTCCTATTTATAGAGAAATTCAAATGTGCATGGGAAGAATCAAAACCCAGATTTTAGCTCTCATCCCTACTTGA 3354 0.404 MAPTRKSRSVNKRISSSNDNSPEKDGVNSNKNKQRKKLTDKLGSQWSKEELERFYEAYRKYGKDWKKVATVVCNRSTEMVEALYIMNRAYLSLPEGTASVVGLIAMMTDHYNVMEGSDSERESNDAPGSRKPVKRKREKVQHSVSKDQSHSIASSDDCLSILKKRRFDGIQLQPHAVGKRTPRVPVYKKDDTKNYVSPYRRSLKSTIDANDDEVAHVVALALTEAAQRGGSPQVSQTPSRRVKQKSSPVQSRERKHQMLETARAKFHDVSVDEEFLEGSIESRGAENGEYARDNSSLMDMEGTGAVEVLQKGGKFYRKRERVENLGNHQLDDGGEACSGTEEGLSFSSLKEKVDIEVTNEKLEKFSPKSQKKRNKKLFFGDETPALNALQTLADLSLMMPISTMESESSIQLKGERMVADEDNKFALPEATSSHKRHKLKHSVVPEIEVSTSKKSKIGKESTKDTNAVSESKVQLPFADTTWKRKRKSVVSKVANAKLDSYPSGPLKDEALDDENKPVVKGKHTNQVFSLPKQLKTVKSSESSLCSDQKDLTVSTAEVPLLNEVSLPTKRSRRKMILQRTSLPKEKSSDFILKSQPNKYSTLKEKLSSCLSSNMVCRWFIFEWFYSAIDYPWFAKREFMEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLREERQKLEQYRESVRKHYTELLTGVRDGLPTDLAKPLYVGQRVIALHPKTREVHDGSVLTVDYDKCRIQFDRPELGVEFVMDIDCMPLNPLDNMPEALRRHVGSRKASFMTKEPQINGNSIFGGCEMHSSPVKAKVATIDNLCAQAGCAQPCKVTHHQAKEADIHALSELKRALDKKETLLMELRSANSDILENQNGIECLKDSEVFKKHYATVLVELKEASGQVSDAMLQLRQRNTYRGNSVPPWMKPQASFNVHDDLPNMLDSSLTQELGSTVVQIIKGSRLRAHAMVDAAFQALSLTKEGDDAFMKIGQALDSINHQQLASKSRIPVIRSQEQVHANGSFYHHHSTCGVSEPILNDPSDPKLHNYSELPSDLITSCVATLIMIQTCTERQYPPADVAQILDSAVTSMHPCCPQNLPIYREIQMCMGRIKTQILALIPT 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01970 1117 MobiDBLite consensus disorder prediction 1 42 - -
Pumo3g01970 1117 Coils Coil 676 696 - -
Pumo3g01970 1117 MobiDBLite consensus disorder prediction 115 132 - -
Pumo3g01970 1117 CDD SANT 46 80 IPR001005 -
Pumo3g01970 1117 SMART sant 42 90 IPR001005 -
Pumo3g01970 1117 Pfam Myb-like DNA-binding domain 44 80 IPR001005 -
Pumo3g01970 1117 ProSiteProfiles SANT domain profile. 41 78 IPR017884 -
Pumo3g01970 1117 MobiDBLite consensus disorder prediction 226 255 - -
Pumo3g01970 1117 MobiDBLite consensus disorder prediction 26 42 - -
Pumo3g01970 1117 PANTHER LIN-9 1 1117 IPR010561 GO:0006351|GO:0017053
Pumo3g01970 1117 Coils Coil 843 866 - -
Pumo3g01970 1117 Gene3D - 2 98 - -
Pumo3g01970 1117 MobiDBLite consensus disorder prediction 115 151 - -
Pumo3g01970 1117 MobiDBLite consensus disorder prediction 1 25 - -
Pumo3g01970 1117 FunFam Protein ALWAYS EARLY 3 isoform A 3 98 - -
Pumo3g01970 1117 Pfam DIRP 623 724 IPR033471 -
Pumo3g01970 1117 SMART DIRP_2 624 725 IPR033471 -
Pumo3g01970 1117 MobiDBLite consensus disorder prediction 228 245 - -
Pumo3g01970 1117 SUPERFAMILY Homeodomain-like 41 89 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01970 Pumo-Chr3 30810287 30822785 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo3g01970 DIRP 5.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01970 - - gmx:100789533 2003.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01970 3 30810287 30822785 Pumo3g01970 3 30810287 30822785 ECH
Pumo5g03657 5 86190591 86198250 Pumo3g01970 3 30810287 30822785 PCT