Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01950 ATGGAAGATGCCACGGCGATTGAGGAGAGCGAGCATGTTTCCCCGGACACGGGATCGGAAGATTCCAGTTGCTGTTGCCCAATCTGCTTGGGACCATTCCTTCAACTTTCCTACCTCGACAAATGTTTTCATAAGTTTTGCTTCAATTGCATTTTACGCTGGACCAAGGTGGTTGCTGGCAAGCACCGTTCTCCACCTTCTTCTGTAAAATGCCCCCTCTGTAAGACTGAAAATTTTTCTATCATATTTGGACTTGATGGGAGTTGTTTTCAACGACATTATGTAAATCAGGATTTTGAGGATAGTTTTATCTTATCAAGAGCGCACAGATATAGATTACAATGCTATTACACTGAACAAGGTTTCTTAGATGACATATTCAATATATCACAATATTGGAGATCTCAAAAGTACCATCAGCCAAACTGCTGGCTTGAAAGATGGTTAAGAAGAGAAATTCAAGCTCTTATCCAGGAGGAGGATGTTGACATCATTGTGCACCATATCCTTGGTGTGGTCAAAGCAGCATTATGGACTAGGAGGGAGCAGAAATCACACATGAATGCACCTGAAAAGAAACAGGAGGAGTTCAAGATGTCAGTCTCTGAAGCCGCAAGGCCTTTTCTGGCAGCAAGAACGGACAGACTTATATATGAGATTCAACTATTTCTTGCTTCAGGAATGAATATTGAAGCTTATGATGCTGTTTACATACAACGGTTAGGTTGGAGCTCACCTGGGGTAAACACCGAGGTTTCTCAAAGTGAATTAGTTGATCGCACAACTGTGATTCCATACCTGTACATATTTGATGCTGACTTTGATGAAAATGAGTAG 837 0.4158 MEDATAIEESEHVSPDTGSEDSSCCCPICLGPFLQLSYLDKCFHKFCFNCILRWTKVVAGKHRSPPSSVKCPLCKTENFSIIFGLDGSCFQRHYVNQDFEDSFILSRAHRYRLQCYYTEQGFLDDIFNISQYWRSQKYHQPNCWLERWLRREIQALIQEEDVDIIVHHILGVVKAALWTRREQKSHMNAPEKKQEEFKMSVSEAARPFLAARTDRLIYEIQLFLASGMNIEAYDAVYIQRLGWSSPGVNTEVSQSELVDRTTVIPYLYIFDADFDENE 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01950 278 SUPERFAMILY RING/U-box 25 81 - -
Pumo3g01950 278 MobiDBLite consensus disorder prediction 1 22 - -
Pumo3g01950 278 ProSitePatterns Zinc finger RING-type signature. 42 51 IPR017907 -
Pumo3g01950 278 ProSiteProfiles Zinc finger RING-type profile. 26 75 IPR001841 -
Pumo3g01950 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 86 IPR013083 -
Pumo3g01950 278 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 19 240 - -
Pumo3g01950 278 SMART ring_2 26 74 IPR001841 -
Pumo3g01950 278 Pfam Zinc finger, C3HC4 type (RING finger) 26 74 IPR018957 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01950 2 88 C3H Transcription Factor Family AT5G19430 34.066 8.55e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01950 - - gmx:100808733 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01950 3 30599932 30601924 Pumo3g01950 3 30599932 30601924 ECH