Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01943 ATGGAAGTTAATTCTACAACCACTGTACCTGCATGGCCACCAACTAAGAACCATTCTCACACGCAACACCACTTACATTCAGAAAGACATAGCCATTTCCCCTCCAAAACCATTCTCATAGTCATAACCATCTCATTGGTCACCTTAGTCACGGTCCTATTTATCATTTTTGTGGTCTTATTCTTGATCCGTCGCCAAAAATCCTCCAGCAAGAATGGAACTTGCGAAGAAGACTGCAGAGAGCTTCATGACACAAGCAGCAGGCTCATCACTTCAACAACGTTGAATTCTAGCCCAGATGTGAAGAGTGGTTGTCTTCATGGGGGAAATTTAAGCAGGACCCCAGCACCTAAATTTCGAGGAGTCCAAGTGTTCACGTATAGGGAGTTAGAAATTGCCACGGATAGATTCAGCGAAGTAAATGTGATTGGTAGTAATGGAGGGCATGGCTTGATGTATAGAGGGGTTCTAAGTGATGGCACTTTGGCAGCAATTAAGTTGCTTCGCACTGAGGGTAAGCAAGGGGAGCGTGCCTTCAGAATAGAGGTCGATCTCCTAAGTCGCTTGCACTCTCCCTATTTGGTGGAGTTACTTGGCTATTGTGCTGATCAACACCACAGGTTATTGATTTTTGAATACATGCCCAATGGTACTCTCCACTACCATCTTCACACCCGCAACGATCAAACTCAACCGTTGGATTGGTGGGCCCGGATGAGGATAGCCCTTGATTGTGCCAGAGCACTGGAATTCTTGCATGAACATGCAGTCTCTCCTGTGATCCACAGAGACTTTAAGAGTAACAACGTTCTACTGGATCAAAATTTCCGTGCCAAGGTGTCTGATTTTGGATTGGCTAAGATGGGATCAGAGAAGAGGAACGGTCAGGTTTCCACCCGTGTGTTGGGGACCACTGGATATTTGGCACCAGAGTACGCCACGGGTAAGCTCACTACAAAGTCAGATGTTTACAGCTATGGTGTGGTTCTTCTCGAACTGCTCACGGGACGTGTGCCTGTTGATATCAAGCGGGCCCCAGGAGAACACGTCCTTGTCTCTTGGGCTCTTCCAAGGTTGACAAACAGAGAAAAGGTGATTGAAATGGTTGACCCAGCTCTACGCGGACAGTACTCAAAGAAGGATTTAATTCAGATAGCTGCCATTGCAGCAATGTGCATACAGCCAGAAGCTGATTACAGGCCACTCATGACAGATGTTGTACAATCACTGATACCACTTGTTAGGAACCAATCCTCTATTAGTTCATCTAGCTCCCTACAATTTCAGAAACAAACGCCAAGTCCAAGTCATTAA 1314 0.4604 MEVNSTTTVPAWPPTKNHSHTQHHLHSERHSHFPSKTILIVITISLVTLVTVLFIIFVVLFLIRRQKSSSKNGTCEEDCRELHDTSSRLITSTTLNSSPDVKSGCLHGGNLSRTPAPKFRGVQVFTYRELEIATDRFSEVNVIGSNGGHGLMYRGVLSDGTLAAIKLLRTEGKQGERAFRIEVDLLSRLHSPYLVELLGYCADQHHRLLIFEYMPNGTLHYHLHTRNDQTQPLDWWARMRIALDCARALEFLHEHAVSPVIHRDFKSNNVLLDQNFRAKVSDFGLAKMGSEKRNGQVSTRVLGTTGYLAPEYATGKLTTKSDVYSYGVVLLELLTGRVPVDIKRAPGEHVLVSWALPRLTNREKVIEMVDPALRGQYSKKDLIQIAAIAAMCIQPEADYRPLMTDVVQSLIPLVRNQSSISSSSSLQFQKQTPSPSH 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01943 437 Gene3D Phosphorylase Kinase; domain 1 110 213 - -
Pumo3g01943 437 FunFam Receptor-like serine/threonine-protein kinase ALE2 214 427 - -
Pumo3g01943 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Pumo3g01943 437 MobiDBLite consensus disorder prediction 1 18 - -
Pumo3g01943 437 PANTHER OS01G0750732 PROTEIN 22 424 - -
Pumo3g01943 437 CDD STKc_IRAK 143 413 - -
Pumo3g01943 437 MobiDBLite consensus disorder prediction 1 29 - -
Pumo3g01943 437 Pfam Protein tyrosine and serine/threonine kinase 147 410 IPR001245 GO:0004672|GO:0006468
Pumo3g01943 437 SUPERFAMILY Protein kinase-like (PK-like) 119 410 IPR011009 -
Pumo3g01943 437 Gene3D Transferase(Phosphotransferase) domain 1 214 432 - -
Pumo3g01943 437 ProSiteProfiles Protein kinase domain profile. 138 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01943 437 FunFam Serine/threonine-protein kinase PBS1 105 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01943 Pumo-Chr3 30554361 30557903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01943 36 435 Receptor kinase-like Gene Family AT3G58690 54.106 5.99e-150 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Pumo3g01943 PK_Tyr_Ser-Thr 3.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01943 - - gmx:100499645 766.918