Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01941 ATGAATAGCTCTTACAAAAATGGAGGAATCTCTTTCCTTCTCTTCCTCTTCCTCTTCCTCTCTCCTTTTGCGGCAGCGCAACCCGGCACCAACAACCAAAACCAATCGTATTACAACAAGTTCAGCCCTTCCATGGCGATTATAGTCGTGATCCTCATCGCCGCGCTCTTCCTCATGGGCTTCTTCTCCATCTACATCCGCCACTGCTCCGACTCCCCCTCCGGCAGCATCCGCAACCTCGCCGGAGCAACAGGCCGCTCGCGGCGGGGCTCGCGCGGCCTGGACCAGGCGGTGATCGACACGTTCCCGACGCTGGAGTACTCCGTGGTGAAGATCCACAAGCTCGGAAAGGGGACGCTGGAGTGCGCGGTGTGCTTGAACGAGTTCGAGGACACCGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTGTTCCACCCGGAGTGCATCGACGAGTGGCTAGCTTCCCACACCACTTGCCCCGTGTGCCGCGCCAACCTCGTTCCCCAACCCGGCGAGTCCGTCCACGGAATCCCGATCTTCGATGCTCCTCAAGATATCGAGGCCCAAAACGACTCCGTGGAGCCCGCTCCCGAACAGCAAGACCCCAAGGCGGAACCTCAACCTCAAGTGCTCTCCCTAAACCAGACGCTCAACCGGAACCGCACCAGAGGCTCGCGGTCGGGCCGGCCGCCCCGGTTCCCGCGGTCCCACTCGACCGGTCATTCTTTAGTCCAACCGGGCGAAGACACTGAACGGTTCACTCTGAGGCTTCCCGAGGAAGTTAGAAAGCAGTTACTGCAGAACCCGGAGCTGCATCGCGCGAGAAGCTTGGTTATCTTACCGAGAGAGAGTAGTTCGCGGCAGGGATATCGAACCGGTGAAGGAAGTAGCAGAGGGAGGCGGTTGGACCGGGGGTTCAAGTCTGACCGGTGGGTTTTCACGATGGCGCCGCCTTTCTTAGTGAGAGCGTCGTCGATTAGGTCGCCCAGGGTGGCCAATAACGGCGGCGAAGGAACGTCCGCTCCTCTGGAATCTGTTTGA 1044 0.5958 MNSSYKNGGISFLLFLFLFLSPFAAAQPGTNNQNQSYYNKFSPSMAIIVVILIAALFLMGFFSIYIRHCSDSPSGSIRNLAGATGRSRRGSRGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGESVHGIPIFDAPQDIEAQNDSVEPAPEQQDPKAEPQPQVLSLNQTLNRNRTRGSRSGRPPRFPRSHSTGHSLVQPGEDTERFTLRLPEEVRKQLLQNPELHRARSLVILPRESSSRQGYRTGEGSSRGRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVANNGGEGTSAPLESV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01941 347 MobiDBLite consensus disorder prediction 191 251 - -
Pumo3g01941 347 FunFam E3 ubiquitin-protein ligase ATL6 83 170 - -
Pumo3g01941 347 Pfam Ring finger domain 121 164 IPR001841 -
Pumo3g01941 347 SUPERFAMILY RING/U-box 115 171 - -
Pumo3g01941 347 MobiDBLite consensus disorder prediction 206 225 - -
Pumo3g01941 347 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Pumo3g01941 347 CDD RING-H2_EL5-like 121 164 - -
Pumo3g01941 347 MobiDBLite consensus disorder prediction 328 347 - -
Pumo3g01941 347 SMART ring_2 122 163 IPR001841 -
Pumo3g01941 347 PANTHER RING FINGER DOMAIN-CONTAINING 25 173 - -
Pumo3g01941 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 169 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01941 Pumo-Chr3 30542964 30544574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01941 8 342 Rapid Response to Elicitors AT3G05200 48.974 2.29e-98 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01941 K10664 - gmx:100810865 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01941 3 30542964 30544574 Pumo3g01941 3 30542964 30544574 ECH
Pumo5g03685 5 86361863 86362879 Pumo3g01941 3 30542964 30544574 PCT