Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01940 ATGTGTTTGCCCGAGGGAGAGAGAGACAGAGAGAGAGCCATGGCACTAGAGGCAGTGGTGTTTCCACAATCACAAGACCCATTTGGTGGTGGTGGTTACGCATCATCAGTCAAGGACTTCTACAACTGCACCTTGTTGGCGGCTACTACTACTTCACCCAACTGGGGGGACTATGAACCCATCAACATCAACATCAACAAAGAAGAAGAACAAGGTGCTTGTGCTTCTATCTCTACTTTTCTCGATAATAATAATAATAATAATAATAATAATCAGCCTCCAGAGACTTACCCTTATGGAGATTGGACCAGCTCCTCCTCATCTATGTTACCCCACTTGAATGAACTTCAAGAAACCACTACTACTACTGACCCCAGTAACACTACTACTACTACTACTCAAACCTTAGATACCTTAACCACTCGTCCCAAGAGGCGCCGAGCCAAAAGCAGAAAGAACAAGGAAGAAATTGAGAACCAAAGAATGACTCACATTGCTGTGGAGCGCAATAGAAGAAAGCAGATGAATGAGTATCTTTCTGTTCTTCGCGCTCTCATGCCAGACTCTTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTTAAGGAGCTTGAGCAGAGGCTGCATTTTCTTGGTGCTCAGAAAGAAGGAGAGGGGAAATCTGAATCTGATGCTGGTGGTGGTGCAACAAACATGCCCTTTTCTGAGTTCTTCACCTTTCCGCAGTATTCAACAAGTGGTGGTGGTGGTGGTGGTGGTGGTTCTGATAATTCTGCAGCCATAGGTGAGGACGTGGGTGAGGTTAAGTGTGGCATTGCTGACATAGAAGTGACCATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCCAAGAAGCGCCCCAAGCAGCTCTTGAAGTTGGTTTCTGGTTTGCATACCATGCGCCTCTCAATCTTGCACCTAAATGTTACTACCACTGGTGAAGTTGTTCTCTACTCCCTCAGTGTTAAGGTAGAAGATGATTGCAAGTTGGGATCAGTTGATGACATAGCTGCAGCTGTGTACCAGATGCTAGATAGGATTCAGCAAGAGGCAATGTTGAATTAA 1104 0.4475 MCLPEGERDRERAMALEAVVFPQSQDPFGGGGYASSVKDFYNCTLLAATTTSPNWGDYEPINININKEEEQGACASISTFLDNNNNNNNNNQPPETYPYGDWTSSSSSMLPHLNELQETTTTTDPSNTTTTTTQTLDTLTTRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRALMPDSYIQRGDQASIIGGAINFVKELEQRLHFLGAQKEGEGKSESDAGGGATNMPFSEFFTFPQYSTSGGGGGGGGSDNSAAIGEDVGEVKCGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLSILHLNVTTTGEVVLYSLSVKVEDDCKLGSVDDIAAAVYQMLDRIQQEAMLN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01940 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 210 IPR011598 GO:0046983
Pumo3g01940 367 PANTHER MAX DIMERIZATION, MAD 76 364 - -
Pumo3g01940 367 Pfam Helix-loop-helix DNA-binding domain 160 211 IPR011598 GO:0046983
Pumo3g01940 367 SMART finulus 165 216 IPR011598 GO:0046983
Pumo3g01940 367 Gene3D - 144 224 IPR036638 GO:0046983
Pumo3g01940 367 MobiDBLite consensus disorder prediction 118 139 - -
Pumo3g01940 367 MobiDBLite consensus disorder prediction 118 155 - -
Pumo3g01940 367 CDD bHLH_AtFAMA_like 162 230 - -
Pumo3g01940 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 222 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01940 Pumo-Chr3 30514048 30515884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01940 14 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 44.478 7.27e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g01940 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01940 - - pvu:PHAVU_007G181900g 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01940 3 30514048 30515884 Pumo3g01940 3 30514048 30515884 ECH
Pumo5g03686 5 86394496 86396651 Pumo3g01940 3 30514048 30515884 PCT