Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01929 ATGCATTGCAGGGACGAGAAGAAAAACCAAGCTAATAAATCCAAGAAGGTTACAATTGGAGAAGCTTTAAATATTAAACCCAAGAGACAAACCTCTCTATTATCTTGCTCATCTTCTGCCCATGACTTGAGGCATTTGGAATTGGAGAAAGAGAAAAAAGATATGGCATCACCAAGAGGAGTCTTAGAAGCCTGCATGAAAGACTATGACTCTCACGACCAATCACCTGAATCAGAAACCACTTGTCCAAGCACGAGGGCACGCTCTCACTGGTCCAAATTCTTCAAACTTTTGAAGAAAAAATCTTTTAAGCGCCTAGGGTCCCTCCCTCCTCTTAGTGTGCCAAAGATTCCAAAGTGGAAAAGCAAAAGCAGCAGAGAAAATCAAGTTCTAAGTAATCTATACAACTTCAGGTCTTCTTGGGTGACTTTCAGCCTCTCTGAACTCAGAAATGCAACCAACAGTTTTAGCAATGAAAATATAATTGGAAGAGGTGGTTTTGCTGAGGTTTACAAGGGGTGTCTCCAAGATGGGCAATTAATAGCGGTGAAGAAATTGACTAAAGGGACCACAGATGAAAAAACCGCAGGCTTTCTATCTGAGCTAGGCGTAATTGCTCATGTTGACCATCCTAACACTGCCAAGCTAGTTGGATGTTGTGTAGAAGGAGAAATGCAACTTGTCTTTGAACTATCCCCACTCGGAAGTTTAGGATCTCTTCTTCATGGTTCAGATAAAAACAAATTAGATTGGAGTAAAAGGTATAAAATTGCTCTGGGGATAGCTGATGGTCTCCTCTATCTGCATGAGTGTTGTCACAGGCGAATCATTCATAGAGATATTAAGGCAGAGAATATTCTGCTCACGGAGAATTTTGAGCCACAGATATGTGATTTTGGGCTTGCAAAGTGGTTACCAGAACAATGGACTCACCATAATGTTTCAAAATTTGAAGGCACATTTGGCTATTTTGCTCCTGAATATTTCATGCATGGAATAGTAGATGAGAAAACTGATGTTTTTTCATTTGGGGTCCTACTTTTGGAGATCATAACTGGGCGTCCAGCGGTGAATCATTTGCAACAGAGTGTTGTAATATGGGCAAAACCATTGCTTGACGCTAATCAAACCAAGGACCTCGTTGATCCTTCTCTTGGCGATAATTATGACCGAGAACAGTTGGGTTGTGTAGTTTTGACTGCATCAATGTGTATTGAGCACTCTCCTATCTTACGCCCCCGCATGAGTCAGGTTGTAACACTGCTACGAGGCGAAGACCATGTTCTGAAATCTACAAAATCAAGCCGAAGGAGGCCTCTCCAAAGAACATACTCAGAAGAGCTACTGGACGTGCAAGAATACAACTCAACAAAATATCTAAGAGATCTCAAGCGACTTGAGCAGATTGCATTGGGCTAA 1419 0.4158 MHCRDEKKNQANKSKKVTIGEALNIKPKRQTSLLSCSSSAHDLRHLELEKEKKDMASPRGVLEACMKDYDSHDQSPESETTCPSTRARSHWSKFFKLLKKKSFKRLGSLPPLSVPKIPKWKSKSSRENQVLSNLYNFRSSWVTFSLSELRNATNSFSNENIIGRGGFAEVYKGCLQDGQLIAVKKLTKGTTDEKTAGFLSELGVIAHVDHPNTAKLVGCCVEGEMQLVFELSPLGSLGSLLHGSDKNKLDWSKRYKIALGIADGLLYLHECCHRRIIHRDIKAENILLTENFEPQICDFGLAKWLPEQWTHHNVSKFEGTFGYFAPEYFMHGIVDEKTDVFSFGVLLLEIITGRPAVNHLQQSVVIWAKPLLDANQTKDLVDPSLGDNYDREQLGCVVLTASMCIEHSPILRPRMSQVVTLLRGEDHVLKSTKSSRRRPLQRTYSEELLDVQEYNSTKYLRDLKRLEQIALG 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01929 472 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 132 231 - -
Pumo3g01929 472 PANTHER OS08G0249100 PROTEIN 26 456 IPR046958 -
Pumo3g01929 472 Gene3D Phosphorylase Kinase; domain 1 117 230 - -
Pumo3g01929 472 Pfam Protein tyrosine and serine/threonine kinase 159 367 IPR001245 GO:0004672|GO:0006468
Pumo3g01929 472 ProSiteProfiles Protein kinase domain profile. 156 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01929 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Pumo3g01929 472 Gene3D Transferase(Phosphotransferase) domain 1 233 446 - -
Pumo3g01929 472 SUPERFAMILY Protein kinase-like (PK-like) 135 422 IPR011009 -
Pumo3g01929 472 MobiDBLite consensus disorder prediction 1 22 - -
Pumo3g01929 472 SMART serkin_6 156 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01929 472 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 233 436 - -
Pumo3g01929 472 ProSitePatterns Protein kinases ATP-binding region signature. 162 185 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01929 Pumo-Chr3 30449807 30452495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01929 143 428 Receptor kinase-like Gene Family AT1G53420 45.085 2.60e-73 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pumo3g01929 PK_Tyr_Ser-Thr 1.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01929 - - gmx:100781529 839.336