LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g01922	ATGGAATGCAACAAGGACGAGGCTTTGAGGGCTAGGCAAATTGCCGAAGCTAGAATGCAAAGAGGTGAATTTGCGGAGGCACTCAAGTTTGCTACCAAGGCCGAAAGACTGTATGCCAACGTTGAGAACATTGCCCAGATTCTTACGGTTTGTGAGGTTCACATTGCTGCACAGAAAAAACTCTCTGCCTCTGACTTGGACTGGTATGCAATTCTTCAGATTGAAAGGCTGGCTGATGAAGCAACAGTAAAGAAACAGTACAGGAGGCTTGCACTCTTACTTCATCCTGATAAGAATAAGTTTGCCGGTGCAGAAGCTGCTTTCAAGTTGATTGGGCAAGCCAATAGGGTCTTGACTGACCAAGCAAAACGTTCTTTGTATGACATCAAGTTTGGAGCCTCTGTGAGAGGTGCCGCTCCTAAGACCTCGCACTCAAATGGGAATGTGTTTGCGGCAAAACATAATGCAAATGCAACAAATAATCAGAAGAGTTCTGATTCACACCATTACTCAAATGGTAATTTGTTTTCTGCAAAATATGATGCAAATGCAACAAATTATCAGAAGAATTCTTATCCAAACTCCACTGGTTCCAACAACAAAGCTGGACAGATGACATTCTGGACATCTTGCCAACATTGTAATACTAGGTACCAGTACTGCATGCTTGTTGTAAATGCAACCTTACGCTGTCAACATTGTTTGAAGTCATTTAAAGCTCATGTTATTAGATTGGGATACCAGGGTGTCTCACCATCAGAATTTGCTTCAGTAAATATCCAGAAAGAAGCTCCAATGCATGGTCCCCCAAAACCAGCCTCAGAAAGCACTGGTGGAAAACCCTTTGGTGGAGAACATGCTGGTACATTTGTGCAGTCAAATCCTACATCTGTGAAAAAATGTGCTGCTGGAGTTGGTAGCCGTTGTGAAGGTCAAAAGAGTAAAGATGGCTATGTTCCTGCATCAAGAGGCATGGAGTCACAGGCCTCCAAAAATGTTGCAAGTAAAAGAGTAAGGCAGCCAGCACCAGATTCAGCAGAAAGTTTCAAAGCTAGAAATGGTGATGAGATGAAAGATGCCAATGTTCGAGAAAATGATGTTTATCCTTCAAGAGTTAATTCTAGGAGATCTTCAAGGAATAAGCAGCATGTTTCATATGTGGAAACCTCTGAAGATGACGATTTTGAGATTCCTTCTAAAAAGCCACGGCATAATGGACCACTTAATGCCGATGAAGTTGAGAAACAGAACGTGCCTTCAAGTGGTGGGTCGTCCGTTAACAATATTCCAGCTACTTCAGCTGCTGGTGTGGCTGATCAGAACAGAGAGAAGGTATCCGAGTCAGATATTGGTCTTGGAACGTCAAAAGATGATAACTGCTCCCCATTGAATTCAGATGTTCCTTCTGGTCCAGGGATATTTCATTGTCCTGATTCAGATTTCAATGATTTTGAGAAGGATAAGGAGGAGCATTGTTTTGCTGTTAATCAGTTCTGGGCAATTTATGATACCACTGATGCGATGCCAAGATTTTATGCTCTTGTCAAGAAAGTGGCCTCCCCTTTCCAGTTGAAGATTACTTGGTTGGAACCTGACCCAGATGACCAAGGTGAAATTGATTGGGATGATACAGAATTGCCTATTGCTTGCGGTAAGTTCAGACTTAGTGGTTCTCAGAAAACTACAGATCGTACTATGTTCTCTCATCAGGTGCGGTGCATAAAAGAAACTGGCAAAGGTTCTTATCTGGTATGTCCTAATAAGGGAGAAACTTGGGCAATTTTCAGAGATTGGGATATCAAATGGAGTTCCAATCCAGAAAAACATTTGAAGTATGACTTCGAATATGTGGAAATCCTATCAGATTTTGCTGAGAATGTTGGCATCGCAGTTGCTTATCTGGGCAAAGTGAAAGGATTTGTTAGCCTCTTTCAGAAAACTGAGAAGAATGGAGTGAACATATTTTATGTCCGACCTAATGAACTATACAGGTTCTCACATCGAATTCCTTCTTATAAGATGACTGGTAATGAAAGGGAGGATGTTCCAAGAGGATCTTTTGAACTTGATCCTGCTGCCCTGCCTACTCATCTCTTTGAAGTTGGTGATTCGGGTAATGTGAAGATGTGA	2130	0.4197	MECNKDEALRARQIAEARMQRGEFAEALKFATKAERLYANVENIAQILTVCEVHIAAQKKLSASDLDWYAILQIERLADEATVKKQYRRLALLLHPDKNKFAGAEAAFKLIGQANRVLTDQAKRSLYDIKFGASVRGAAPKTSHSNGNVFAAKHNANATNNQKSSDSHHYSNGNLFSAKYDANATNYQKNSYPNSTGSNNKAGQMTFWTSCQHCNTRYQYCMLVVNATLRCQHCLKSFKAHVIRLGYQGVSPSEFASVNIQKEAPMHGPPKPASESTGGKPFGGEHAGTFVQSNPTSVKKCAAGVGSRCEGQKSKDGYVPASRGMESQASKNVASKRVRQPAPDSAESFKARNGDEMKDANVRENDVYPSRVNSRRSSRNKQHVSYVETSEDDDFEIPSKKPRHNGPLNADEVEKQNVPSSGGSSVNNIPATSAAGVADQNREKVSESDIGLGTSKDDNCSPLNSDVPSGPGIFHCPDSDFNDFEKDKEEHCFAVNQFWAIYDTTDAMPRFYALVKKVASPFQLKITWLEPDPDDQGEIDWDDTELPIACGKFRLSGSQKTTDRTMFSHQVRCIKETGKGSYLVCPNKGETWAIFRDWDIKWSSNPEKHLKYDFEYVEILSDFAENVGIAVAYLGKVKGFVSLFQKTEKNGVNIFYVRPNELYRFSHRIPSYKMTGNEREDVPRGSFELDPAALPTHLFEVGDSGNVKM	709

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g01922	709	PRINTS	DnaJ domain signature	69	87	IPR001623	-
	Pumo3g01922	709	PRINTS	DnaJ domain signature	87	102	IPR001623	-
	Pumo3g01922	709	PRINTS	DnaJ domain signature	103	123	IPR001623	-
	Pumo3g01922	709	ProSiteProfiles	dnaJ domain profile.	67	131	IPR001623	-
	Pumo3g01922	709	SUPERFAMILY	Chaperone J-domain	63	130	IPR036869	-
	Pumo3g01922	709	Gene3D	DnaJ domain	53	153	IPR036869	-
	Pumo3g01922	709	MobiDBLite	consensus disorder prediction	381	410	-	-
	Pumo3g01922	709	PANTHER	DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED	1	701	-	-
	Pumo3g01922	709	CDD	DnaJ	67	120	IPR001623	-
	Pumo3g01922	709	SMART	dnaj_3	66	123	IPR001623	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g01922	Pumo-Chr3	30371513	30374043	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g01922	4	243	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	30.204	2.99e-23	100

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g01922	-		-	gmx:102662460	1145.95

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