LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g01913	ATGGGGTGTGTGATTAGCAGAGAAGTGTCATCAGGAATAGTGTCTGAGGTGAAGGAGGAGAAGAAGGTTGATCAAGTGTCCACAAGCAGAGCTGAGGAGGAGAAGAGTTCGAGTGTTGAGTCCAACAAGAAGGTTGATCAAGAGTCCACAAGCATAGCGGATGGGAATGTCATAGAGGCTCAGAATGGTGAGAAGGAGAAGGAAGAGAATGGTGGTGGTGATGATGGGGTTCGGCGGCCGAAGGGTGAAAAAAGAAGATCAAAGTCAAATCCAAGGCTAAGTAATCCACCAAAGCATTTGCAGGGGGAGCAAGTAGCAGCTGGCTGGCCACCTTGGCTAACAGCAGTGTGTGGGGAAGCACTTAATGGGTGGATTCCACGAAAGGCTGACACATTTGAGAAAATTGATAAGATTGGTCAAGGAACTTATAGTAATGTATACAAAGCTAAAGACACATTGACGGGTAAGATTGTTGCACTGAAGAAGGTTCGGTTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCCAGAGAGATTCTTATTTTGCGAAGATTGGATCATCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCCAGAATGTCCTTGAGTTTGTACCTGGTGTTTGATTACATGGTGCATGATTTAGCTGGACTTGCTGCAAGCCCTGACATCAAGTTTACAGAGCCTCAGGTTAAATGTTACATGCATCAACTGCTATCAGGACTTGAGCACTGTCATAGTCGAAACGTACTTCACCGTGATATTAAAGGATCAAACCTTCTTATTGACAATGAAGGAATACTTAAAATTGCTGACTTCGGACTTGCATCTCTCTTTGATCCAAATCGCAGGCAACCCATGACTAATCGTGTGGTTACCCTTTGGTACCGACCTCTTGAGTTGCTTCTTGGTGCCACAGAATATGGTGCAGCCATCGACCTTTGGAGTGTTGGTTGCATTTTAGGAGAGTTATTGGCTGGGAAACCTGTTTTGCCTGGTCGTACAGAGGTGGAACAACTGCATAAGATATACAAACTTTGTGGTTCACCTTCTGATGAGTATTGGAAGAAGTCAAAGATGCCTAATGCTACCTTGTTTAAACCTCGAGAACCATATAAGAGATGCATAAGAGAGACATTTAAAGATTTTCCACCTTCGGCACTGCCCCTTATTGACACTCTTCTTGCAATTGATCCAGCAGAACGGAAGAGCGCCACAGATGCTCTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATATCCCCCAACCAAGGAAATAGATGCTAAACGACGGGATGATGAAGCAAGGAGATCAAGAGCTGCTGGCAAAGCTCACGGTGATGGTACAAAGAAGCATCGTACGCGTGATCGCGCTGTAAAAGCTGCTCCTGCTCCTGATGCCAATGCTGAGCTTCAATCCAACATTGATAGAAGGCGTTTAATCACTCATGCAAATGCTAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATGAAGATGGACAGCTTGGCTTTCCTTTGGGATCTTCTAATCATATTGATCCAGATATTGTTCCTTCTGATGTTTCTTTGGGTTCAACCTCATACACCTTTTCTAAGGAACCATTCCAAGCTTGGTCAGGTCCCATTGGTAATCCTGCTAGCATTGGTGTCATAAAGCGGAAGAAACACACTGCAGGTGATGCATTGGATTTATCAAAACCATATAAAGGTGCCCTCAAGGAAAAGGTTAAAGGAAAGAAAATCATAGCTTAG	1785	0.4375	MGCVISREVSSGIVSEVKEEKKVDQVSTSRAEEEKSSSVESNKKVDQESTSIADGNVIEAQNGEKEKEENGGGDDGVRRPKGEKRRSKSNPRLSNPPKHLQGEQVAAGWPPWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSLSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYMHQLLSGLEHCHSRNVLHRDIKGSNLLIDNEGILKIADFGLASLFDPNRRQPMTNRVVTLWYRPLELLLGATEYGAAIDLWSVGCILGELLAGKPVLPGRTEVEQLHKIYKLCGSPSDEYWKKSKMPNATLFKPREPYKRCIRETFKDFPPSALPLIDTLLAIDPAERKSATDALRSEFFTTEPYACDPSSLPKYPPTKEIDAKRRDDEARRSRAAGKAHGDGTKKHRTRDRAVKAAPAPDANAELQSNIDRRRLITHANAKSKSEKFPPPHEDGQLGFPLGSSNHIDPDIVPSDVSLGSTSYTFSKEPFQAWSGPIGNPASIGVIKRKKHTAGDALDLSKPYKGALKEKVKGKKIIA	594

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g01913	594	MobiDBLite	consensus disorder prediction	424	478	-	-
	Pumo3g01913	594	Gene3D	Phosphorylase Kinase; domain 1	119	214	-	-
	Pumo3g01913	594	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	252	264	IPR008271	GO:0004672\|GO:0006468
	Pumo3g01913	594	PANTHER	CELL DIVISION PROTEIN KINASE	130	420	-	-
	Pumo3g01913	594	MobiDBLite	consensus disorder prediction	43	57	-	-
	Pumo3g01913	594	CDD	STKc_CDK9_like	132	416	-	-
	Pumo3g01913	594	Pfam	Protein kinase domain	132	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g01913	594	MobiDBLite	consensus disorder prediction	434	471	-	-
	Pumo3g01913	594	SMART	serkin_6	132	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo3g01913	594	ProSitePatterns	Protein kinases ATP-binding region signature.	138	161	IPR017441	GO:0005524
	Pumo3g01913	594	Gene3D	Transferase(Phosphotransferase) domain 1	215	455	-	-
	Pumo3g01913	594	SUPERFAMILY	Protein kinase-like (PK-like)	126	423	IPR011009	-
	Pumo3g01913	594	MobiDBLite	consensus disorder prediction	13	42	-	-
	Pumo3g01913	594	FunFam	probable serine/threonine-protein kinase At1g54610	215	456	-	-
	Pumo3g01913	594	MobiDBLite	consensus disorder prediction	60	90	-	-
	Pumo3g01913	594	MobiDBLite	consensus disorder prediction	1	105	-	-
	Pumo3g01913	594	FunFam	probable serine/threonine-protein kinase At1g54610	119	214	-	-
	Pumo3g01913	594	ProSiteProfiles	Protein kinase domain profile.	132	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g01913	Pumo-Chr3	30226983	30234190	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g01913	124	454	Core Cell Cycle Gene Families	AT5G10270	53.602	3.92e-122	369

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Pumo3g01913		Pkinase	3e-65	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g01913	K08819		-	gmx:100817289	1046.57