Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01896 ATGCACAGCTGCCATAAACGAACAAACGGCTACCTTGATACTCTAATATGCGGAAAAAGGAAATGTGGTATCTCCTCAACAATGCTTTCCCCCTTGGTTTCTTGGATCTTGTCGCCCCCCTCTTCCTCCTCCTCTTCCTCTTCCGAAGAAGAAGAAGAAGAATTCCTTGACATTAATCATGAAAACGACCAAAAGTTCAATGTACAAGATGACGAGAACGACCATTTTCTTAACTCATGCGATGTGGATGACACCATTCCCGTTGCACTTGCCGTTCCCAATGCCTCCCCCGCCGTGACGGTGGCCTTCCCGGCCGATGACGAAAGAAACACGGTCTCCGCCACCACTATAGTAACACGCTCGAAAGGGCAGCGCAGTGCAAAATATTCCGGCATGGTGAGACAATATCAGAGGCTGTGGACGAAGGAGGACGAGATTGAACTGTTGAAGGGATACCTTGATTACATCAAGCAGCATAGAAGGGAAACCACCACCCTCCAAAACGTCGTAGCCTCGTTGTATGATCACGTGAGGCCCAAACTGAACGTGGGTTTCAACAAAAACCAGCTTGTTGAGAAACTGCGTAGGTTAAAGAGAAAACACAAGGTGGCTTTGGACAAAGGCAAGGACAACTTTAGGAACCCCCAGGAGCAGGCCATTTTCGAAATTTCCCACAAGATTTGGGGCAATGGCACGGATAATATAATAGACCAAGATGCCTTGGATGGTGATGAATCTGGACACACTCCTGAAAGTCATGATCATGTTGGCAACGTTAAGGTGAATATTGAACAAGTTCACAACAGTGATGAAATAGACAATAGAGGGCCAAAGCGGTTGCGGCTAGATGATGTGAACAGAACAAATGACCAGAACAATGGTGATAGCATACAGGGCTTCATTGAGGAGACCATGAGGTCCTGTTTCTCGCCATTGCTGAAGGAAGTGTTGGATGATGAAACACAGGAAGAGCCACCTCCTGAGTCGGTGGCAATCCCAATGCTATTATGCCCCAGGGAAGTGGACCATGAACAATGGAGAAAACGGAGGATTTTGGAGCTGGAGGTGTATGTGAAGCGGTTGGAGTTGTTGCAGGATCAGATCAAGGCTAGATTGGAGGACTTGCGATCTAGCTGA 1137 0.4749 MHSCHKRTNGYLDTLICGKRKCGISSTMLSPLVSWILSPPSSSSSSSSEEEEEEFLDINHENDQKFNVQDDENDHFLNSCDVDDTIPVALAVPNASPAVTVAFPADDERNTVSATTIVTRSKGQRSAKYSGMVRQYQRLWTKEDEIELLKGYLDYIKQHRRETTTLQNVVASLYDHVRPKLNVGFNKNQLVEKLRRLKRKHKVALDKGKDNFRNPQEQAIFEISHKIWGNGTDNIIDQDALDGDESGHTPESHDHVGNVKVNIEQVHNSDEIDNRGPKRLRLDDVNRTNDQNNGDSIQGFIEETMRSCFSPLLKEVLDDETQEEPPPESVAIPMLLCPREVDHEQWRKRRILELEVYVKRLELLQDQIKARLEDLRSS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01896 378 Pfam Protein of unknown function, DUF573 137 229 IPR007592 GO:0006355
Pumo3g01896 378 Coils Coil 358 378 - -
Pumo3g01896 378 PANTHER BNAANNG10740D PROTEIN-RELATED 40 372 IPR007592 GO:0006355
Pumo3g01896 378 Coils Coil 187 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01896 Pumo-Chr3 30036311 30037447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01896 88 377 GeBP Transcription Factor Family AT5G28040 33.333 7.65e-45 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Pumo3g01896 DUF573 1.6e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01896 - - gmx:102662842 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03754 5 87478244 87480121 Pumo3g01896 3 30036311 30037447 PCT