Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01893 ATGGCGGACAAGGCAGTCACCATCCGAACCAGAAAATTTATGACTAACAGGCTTCTCTCCAGAAAGCAATTCGTCGTTGATGTCCTTCATCCAGGGAGGGCAAATGTTTCCAAGGCTGAACTGAAGGAGAAACTGGGAAGAATGTATGATGTGAAAGACACTAACACTGTATTTGTCTTCAAGTTCCGAACTCATTTTGGTGGTGGCAAGTCCACTGGGTTTGGTTTGATCTATGATTCAGTTGAGAATGCCAAGAAGTATGAGCCTAAGTACAGGCTTATCAGGAATGGACTTGATACCAAAGTAGAGAAATCAAGGAAGCAAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGACCAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGA 414 0.43 MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLGRMYDVKDTNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01893 137 FunFam 40S ribosomal protein S24 1 137 - -
Pumo3g01893 137 Pfam Ribosomal protein S24e 25 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Pumo3g01893 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 131 IPR001976 GO:0003735|GO:0005840|GO:0006412
Pumo3g01893 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Pumo3g01893 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Pumo3g01893 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Pumo3g01893 137 Gene3D - 1 132 - -
Pumo3g01893 137 MobiDBLite consensus disorder prediction 102 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01893 Pumo-Chr3 30016399 30018537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01893 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 85.606 5.27e-83 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01893 K02974 - gmx:100499673 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01893 3 30016399 30018537 Pumo3g01893 3 30016399 30018537 ECH
Pumo5g03755 5 87487849 87490005 Pumo3g01893 3 30016399 30018537 PCT