Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01891 ATGAATGGGGTCACACACCTTGAACCAGATGACTCTGAGTTTGTTGAAGTTGATCCAACTGGCAGATATGGCAGATACAATGAAATCCTTGGTAAAGGAGCTTCAAAGACAGTATATAGAGCATTCGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTGTATGATTTCCTGCAAAGCCCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTCCTGAAAACATTGAAGCACAGAAACATTATGAAGTTTTACACATCATGGGTGGATACTGCTAATAGGAATATCAACTTCGTGACTGAAATGTTCACATCCGGTACACTTAGACAGTATAGGCTAAAGCACAAGAGAGTTAACATCAGAGCGGTGAAGCATTGGTGCAGACAGATCTTGAGCGGACTTCTCTATCTTCATAGTCACGACCCGCCTGTGATCCACAGAGATCTAAAATGCGATAATATTTTTGTCAATGGAAACCAAGGGGAAGTGAAGATTGGGGATCTTGGTTTGGCAGCAATTCTCCGGAAATCTCATGCTGCCCATTGTGTAGGGACGCCCGAGTTCATGGCCCCAGAAGTATATGAAGAGGCATATAATGAATTAGTTGACATATATTCCTTTGGGATGTGCATATTAGAGATGGTCACATTTGAATATCCTTATAGTGAATGTACTCATCCGGCTCAAATCTATAAGAAAGTTATTTCTGGGAAAAAGCCAGATGCTTTGTATAGAGTGAAGGATCCGGAAGTGCGACAATTTGTTGAGAAATGCTTGGCCACAGTGTCTCTAAGGCTTTCCGCAAGGGAGCTTCTTGATGATCCATTTCTTCAAATTGATGATTATGAATATGATTTGAGAAATGTAGACAACAGGGAATTGGATGAATTTGGTCCTCTCATGAGACAGCCATTCTTTGATCTTCATCGAAGCTATAGTAACTTCAGTAATGAATACTCAAATGGCTTTGGATACGAAGGAGACTGGGGTCCTCATCCGGCTGAGATTGAACCTAGTGGAATTGAACTTTTCGAGTACCAAGATGATGAACCCTCTGAAGATGTTGACATAAGCATCAAGGGCAAGAGGAAAGATGATGGTGCTATCTTTTTGAGACTAAGAATTGCTGATAAAGAAGGTTGGGATGCCACTTTTTGTTGTGTCTTTTTAAACCTGTGA 1191 0.4106 MNGVTHLEPDDSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILSGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYRVKDPEVRQFVEKCLATVSLRLSARELLDDPFLQIDDYEYDLRNVDNRELDEFGPLMRQPFFDLHRSYSNFSNEYSNGFGYEGDWGPHPAEIEPSGIELFEYQDDEPSEDVDISIKGKRKDDGAIFLRLRIADKEGWDATFCCVFLNL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01891 396 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01891 396 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01891 396 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Pumo3g01891 396 CDD STKc_WNK 22 281 - -
Pumo3g01891 396 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Pumo3g01891 396 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Pumo3g01891 396 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 384 - -
Pumo3g01891 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Pumo3g01891 396 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01891 396 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Pumo3g01891 396 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01891 Pumo-Chr3 30008633 30010810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01891 1 384 MAP Kinase Kinase Kinase AT3G22420 62.679 1.71e-176 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Pumo3g01891 Pkinase 5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01891 K08867 - gmx:100775959 783.482