Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01883 ATGGTTGCTGGAAACCTTTTGCTTGTGAATCATCATCCTAGTCGTAGGACCTTCTGCATCAGAGTAGAGATGGCGAGACCTTCTGCTTCAGAGTTAGAATGTCATACCCGAAATAACCCACCTGCCTCAAACCGAACCCACATCAAACCGAACCGCCCAAATCCGAAAGCTTATCGGTCGGTGTTGGGCCAAAGATTTTCATTGATCGGTGCAAATCTTAATGAAGCAACCAAAGGAGGGAGCGGGAAAAAAATAGTGCATGGTGATGGTCATAAAAATGCAAAGTCGGAGAAAGGGGAAAGTAAATCGTTGAAGGTGGTTATTGTTGGTGTTCTTAGATCCAAACTATACATTGAGCACAGGAGAGAAGAGGTAAAGAAGCTAGAGAGAAGTGTTAACACAACACAAAACACAAACACAAACATGTTCGATGGAGTACCAGACAAGTTCCACCAATTCATAACTCCAAGAACCTCACTACCTCTTCACTTACCTTTCCCTCTCCATGCTTCAGGCACCCCCAATACCACCTTCCCCACCAATTTTGATCCTTATAACCCTCCCCATCAATTGCCACTCCAACCCAACAACAATCTCTTGCACCCATTACACCATAAAGATGAAGAAGACAAGGAAGAAAACACCACCGTCCCAATGAACTTCGAAATCCAAAGAGATCAAAGGCAACAACTTCCCGAGCTAATTGATCCCTGGACCAACGACGAAGTGCTTGCGCTCTTGAGGATCAGATCTAGCATGGAGAGTTGGTTCCCAGAACTCACTTGGGAACATGTCTCAAGGAAGATAGCAGAGCTTGGATATAAGAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAGAGCAGATATTTCAACAACAACATTAATTACGGCAGCAAGAATAATAATAACAACAATTACCGGTTTCTTAGTGAGCTTGAACAGCTTTATCAGCAAGGGGTGCAGAAACAAGACAAGATGGGCCACCATGCATTGGAAGAAGGGGATTCGAGATCAAACGTTGACGCATCGGTGACAAAACAAAATGAGCAAAGCGACGAGGGACTGGTAGTAGTGGAAAAGACGACAAAGGAGCGCAAGAGGAAGAGGCCTGATAGGTTTGAAATGTTGAAGGGTTTTTGTGAGAGCATTGTGCACAAGATGATGGCTCAACAAGAAGAGATGCACAACAAGCTCCTAGAGGACATGATGAAAAGAGATGAAGAGAAGTACACGAGAGAGGAAGCTTGGAAGAAGCAAGAGATGGAGAAGATGAACAAGGAGCTTGAGATGATGGCACGTGAGCAAGCTATTGCTGGTGATAGACAAGCCAACATTATCCAAATCCTGAACAAATTCTCAGCAACTTCCTCCCCTGCAAGCCAACCCCTCAACAAGGTAACCACTGGTTCAAACCTAAACACCCACGTTACACAAAACCCTAATCCTTCACAAGCCACAACAGAAAACCCTACCTTAAGTCTTGCACAAGACACATTACAAGTGATTATTCCTTCTACTTCTTCTACTTCAGCTCCAGCTCCTCCCCATAACCCTTGTTCTTGTTCTCTAAATAGCCAAAATAATAATAATAATAATTCAGTAGAGACAAATTCAGTTTTGAATAAAGGGTCCTCATCACACGTTGAGAAAGACGATGTTGGGAGAAGGTGGCCAAAGGACGAAGTGTTGGCACTGATAAACCTGAGGTGCACTAGTGTGAACAATAACAACAACAACAACAACAATGAGGAGAAGGAAGGGAACAAGGTCCCTCTGTGGGAGAGAATCTCACAAGGGATGTCGGAGTTGGGATACAAGAGGAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGGAAAACAAAGGATGTTAATAAGAAGAGGTCCCTTGACTCGAGGACTTGTCCCTACTTTCACCAATTGAGCAGTCTCTATAATCAAGGAAAAGTTGTTCTACAATCTGAAAGCCACTTGAATAATAATCCACCTGAGAATCCCGAGCAAGTGACACCACCAGATCATCAAACACAAGCTGAGTCTTCTTCTCAGGTGGGGTCTGGTGCTTTCAGCGTGCAGGAGGTTGATCATGGAGGTGAGAAAACCTTGATGCAAGTACCTTCTTTGGATTTTGATCAGTTTTAA 2163 0.4387 MVAGNLLLVNHHPSRRTFCIRVEMARPSASELECHTRNNPPASNRTHIKPNRPNPKAYRSVLGQRFSLIGANLNEATKGGSGKKIVHGDGHKNAKSEKGESKSLKVVIVGVLRSKLYIEHRREEVKKLERSVNTTQNTNTNMFDGVPDKFHQFITPRTSLPLHLPFPLHASGTPNTTFPTNFDPYNPPHQLPLQPNNNLLHPLHHKDEEDKEENTTVPMNFEIQRDQRQQLPELIDPWTNDEVLALLRIRSSMESWFPELTWEHVSRKIAELGYKRSAEKCKEKFEEESRYFNNNINYGSKNNNNNNYRFLSELEQLYQQGVQKQDKMGHHALEEGDSRSNVDASVTKQNEQSDEGLVVVEKTTKERKRKRPDRFEMLKGFCESIVHKMMAQQEEMHNKLLEDMMKRDEEKYTREEAWKKQEMEKMNKELEMMAREQAIAGDRQANIIQILNKFSATSSPASQPLNKVTTGSNLNTHVTQNPNPSQATTENPTLSLAQDTLQVIIPSTSSTSAPAPPHNPCSCSLNSQNNNNNNSVETNSVLNKGSSSHVEKDDVGRRWPKDEVLALINLRCTSVNNNNNNNNNEEKEGNKVPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSSLYNQGKVVLQSESHLNNNPPENPEQVTPPDHQTQAESSSQVGSGAFSVQEVDHGGEKTLMQVPSLDFDQF 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01883 720 ProSiteProfiles Myb-like domain profile. 558 622 IPR001005 -
Pumo3g01883 720 MobiDBLite consensus disorder prediction 663 720 - -
Pumo3g01883 720 Pfam Myb/SANT-like DNA-binding domain 236 316 IPR044822 -
Pumo3g01883 720 Pfam Myb/SANT-like DNA-binding domain 557 650 IPR044822 -
Pumo3g01883 720 MobiDBLite consensus disorder prediction 663 696 - -
Pumo3g01883 720 Coils Coil 391 411 - -
Pumo3g01883 720 ProSiteProfiles Myb-like domain profile. 237 289 IPR001005 -
Pumo3g01883 720 MobiDBLite consensus disorder prediction 340 354 - -
Pumo3g01883 720 MobiDBLite consensus disorder prediction 334 354 - -
Pumo3g01883 720 MobiDBLite consensus disorder prediction 77 100 - -
Pumo3g01883 720 MobiDBLite consensus disorder prediction 457 491 - -
Pumo3g01883 720 PANTHER FI21293P1 197 708 - -
Pumo3g01883 720 FunFam Trihelix transcription factor GT-2 238 294 - -
Pumo3g01883 720 SMART sant 555 624 IPR001005 -
Pumo3g01883 720 SMART sant 234 291 IPR001005 -
Pumo3g01883 720 MobiDBLite consensus disorder prediction 507 556 - -
Pumo3g01883 720 MobiDBLite consensus disorder prediction 82 100 - -
Pumo3g01883 720 FunFam Trihelix transcription factor GTL2 559 627 - -
Pumo3g01883 720 MobiDBLite consensus disorder prediction 507 546 - -
Pumo3g01883 720 CDD GT1 557 629 - -
Pumo3g01883 720 Gene3D - 559 627 - -
Pumo3g01883 720 Gene3D - 238 294 - -
Pumo3g01883 720 Coils Coil 118 138 - -
Pumo3g01883 720 MobiDBLite consensus disorder prediction 33 55 - -
Pumo3g01883 720 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01883 Pumo-Chr3 29916921 29921311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01883 142 654 Trihelix Transcription Factor Family AT5G28300 39.728 1.82e-99 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo3g01883 Myb_DNA-bind_4 1.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01883 - - gmx:100804367 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01883 3 29916921 29921311 Pumo3g01883 3 29916921 29921311 ECH
Pumo5g03766 5 87604074 87607599 Pumo3g01883 3 29916921 29921311 PCT