Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01882 ATGGCGAAAGAGCTTCTTCTGCAACTTCGTCTGCTGCTTCTTCTTCCCGAACAACGGTGTCGTTTTGCACCTCCTCTGCCAATGTCCAACTTCGCATTCTCCGCTTTAATAATCACCGTTGTATTGTATTGTATTGTACTTTTCCTATTCTACCTTGAGAAAGGAGAAACGGGAAAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCAGCGCTTCTTGTGAGACATAAGCATGAAAAGAAAAAATATGTGTTGAAGAAGATTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAGATCTGCACACCTGGAGATGGAGCTAATCTCTAAATTAAGAAACCCATTCATTGTGGAGTACAAAGATTCATGGGTAGAAAAGGTTATTGTGAGGGAGGAGATATGTGATTTTGGACTTGCCAAAATGTTGACTTCTGATGATCTTGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATATGAAATGACAGCGCATAAGCCTGCATTCAAAGCATTTGATATACAGGCATTGATTAACAAGATTAATAAGTCCATAGTGGCTCCACTGCCAACAAAATATTCTAGTTCATTTCGAGGTCTTGTTAAAAGTATGCTGCGGAAAAATCCAGAGCTAAGGCCCAGTGCTTCAGAGCTGCTTGGGCACCCACATCTTCAACCTTATGTTCTTAAGGTCCATCTCAAAATCAATAGCCCCAGACGAAGCACATTGCCAGTTCATTGGCCAGAATCCAACTACATGAAGAAAACTAGATTTTTGGTGCCAGAAGATGATCATGATCCCATCTATAGGAATAAGCGGCATTCTTTCACCAATGATCGGACTCTAAATCCTAGTGTATCTGGAGCTGATCAAGATTCTGTATGCTCTACTCTAGAAATAGATTGTACTCCTGACCATTTGAATCAAAGGTTAGCAGAACTACGTATTGGAGATAGCCATGAAGTGAAGTCAATCCAGAAGCCTGTTGTTTCCAGAACTTCTAGCATTGCTAAGACTGCAAGATTCACTTCCTCAAAAGTCTCAGCCACCAACAAGAAATCAATGGAATCCTCAAAGAATCGCAAGACGCTTCCTCTTTCACAAAATACCACAAAATCTGCTAATACTAATCGCAGAGCATCATTTCCACTGCCAACAAGGGGTGGTATTCGGCAGCCTCCTTGCAGGTCCGTCAGTTTGCTTAGTCACGTGTCTTCACCAGATATCTCAGTCAATTCTCCACGAATTGATAAGATGGCTGAATTCCCATTAACATCATATGAAGATTCTTTGTTCCCTATCAATAGAACATCATCCTGTGCACGAGTTTCCCCAGGCTTCCCATCTCACAGCAACCATTCGACTGTGATAGACAAATGCACGGTAGAGGTATATGATAGAGCCTCTAACAAGCCTGGTTGTATGGATGCTTGGCAGGGAATCAAGCAGAGCATGTTAAAGGAAGTTGATGAGGATAAAAGTGGTTCCTCTGATCAAAATGCAACTGCAGGTGCTTCAAGCCACACCTCTTCTGACTTGCGCCGTCGACAATTTGACCCGTCATCATTCCAACAAAGAGCTGAAGCTTTAGAAGGCTTGCTTGAATTTAGTGCAAGATTGCTACAGCAGGCAAGGTATGATGAACTTGGGGTTCTGTTGAAACCATTTGGGCCTGGAAAGGTTTCCCCAAGGGAAACTGCTATCTGGTTGAGTAAGAGCTTCAAAGAGAACACTTTCAACCCAGAAGAATCCATGTAA 1833 0.4255 MAKELLLQLRLLLLLPEQRCRFAPPLPMSNFAFSALIITVVLYCIVLFLFYLEKGETGKYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHLEMELISKLRNPFIVEYKDSWVEKVIVREEICDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPAFKAFDIQALINKINKSIVAPLPTKYSSSFRGLVKSMLRKNPELRPSASELLGHPHLQPYVLKVHLKINSPRRSTLPVHWPESNYMKKTRFLVPEDDHDPIYRNKRHSFTNDRTLNPSVSGADQDSVCSTLEIDCTPDHLNQRLAELRIGDSHEVKSIQKPVVSRTSSIAKTARFTSSKVSATNKKSMESSKNRKTLPLSQNTTKSANTNRRASFPLPTRGGIRQPPCRSVSLLSHVSSPDISVNSPRIDKMAEFPLTSYEDSLFPINRTSSCARVSPGFPSHSNHSTVIDKCTVEVYDRASNKPGCMDAWQGIKQSMLKEVDEDKSGSSDQNATAGASSHTSSDLRRRQFDPSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKENTFNPEESM 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01882 610 SUPERFAMILY Protein kinase-like (PK-like) 54 274 IPR011009 -
Pumo3g01882 610 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Pumo3g01882 610 MobiDBLite consensus disorder prediction 513 545 - -
Pumo3g01882 610 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 58 129 - -
Pumo3g01882 610 ProSiteProfiles Protein kinase domain profile. 1 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01882 610 MobiDBLite consensus disorder prediction 369 407 - -
Pumo3g01882 610 Pfam Protein kinase domain 136 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01882 610 Pfam Protein kinase domain 60 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01882 610 Gene3D Phosphorylase Kinase; domain 1 50 133 - -
Pumo3g01882 610 Gene3D Transferase(Phosphotransferase) domain 1 134 253 - -
Pumo3g01882 610 MobiDBLite consensus disorder prediction 521 536 - -
Pumo3g01882 610 MobiDBLite consensus disorder prediction 369 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01882 Pumo-Chr3 29895466 29902572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01882 135 250 MAP Kinase Kinase Kinase AT1G53570 38.983 3.59e-18 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Pumo3g01882 Pkinase 1.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01882 K08857 - gmx:100804898 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01882 3 29895466 29902572 Pumo3g01882 3 29895466 29902572 ECH
Pumo5g03767 5 87612822 87621730 Pumo3g01882 3 29895466 29902572 PCT