Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01875 ATGGATAGGGTCTTCTCAGTGGACGAAATCTCCGATCACTTCTGGGCGCCGCCGATCCCCGTCTCCTCCGCCGCCGATGAGGCCTCCAAGATGAGCCGCAGCGCCTCCGAGTGGGCCTTCCAGCGCTTCATCCAGGAAGCTTCCGCCTCCGCACCTTCTCCCCCGTCCTCTTCCTCCGCCGCCGACGTCGTCTTCGTGGAGATCGACGATCAACCAAAACCGGCCCCTCCCCCTCCGTCAAACGCCGTCGTTTTGCCCAATGCCCCTGCTCCCGTGCCCCTTGACTCCGACGAATACCAGGCCTTCCTCAAGAGCAAGCTCAACCTCGCATGCGCCGCCGTCGCCATGACTAGGGAATCTTTGGCTAAATCTCAAGACCCATCCCCTTTTTCTGATGGTGGATCACGGCCGACTGATCCTTCTCGAGTTGGGTCTCAGACTACTTCTAAAGGATCTGTTCCTTCTGGAAATGATCCATCTAAGTTACAAGATAAAGATACCACAGCACCAGTTGGGATTCCTTCCATACCTACCATGCAAAAGAAACCTGCTGTTGCAGTTAGGCCATCAACAAGTGGATCATCAAGAGAACAGTCTGATGACGAGGATGCTGAGGGAGAGACATCTATGAATGACAACATGGACCCTGCTGATGCAAAACGAGTAAGGAGGATGCTATCCAATAGGGAGTCAGCCCGACGCTCTAGAAGAAGAAAGCAGGCTCATTTAACTGACCTAGAAACACAGGTGTGTATATTTTATTTTATAGATTTGAGTTGTTTCTGCCCCCTCTTGTGTGTTTGA 804 0.5286 MDRVFSVDEISDHFWAPPIPVSSAADEASKMSRSASEWAFQRFIQEASASAPSPPSSSSAADVVFVEIDDQPKPAPPPPSNAVVLPNAPAPVPLDSDEYQAFLKSKLNLACAAVAMTRESLAKSQDPSPFSDGGSRPTDPSRVGSQTTSKGSVPSGNDPSKLQDKDTTAPVGIPSIPTMQKKPAVAVRPSTSGSSREQSDDEDAEGETSMNDNMDPADAKRVRRMLSNRESARRSRRRKQAHLTDLETQVCIFYFIDLSCFCPLLCV 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01875 267 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 218 250 IPR004827 GO:0003700|GO:0006355
Pumo3g01875 267 MobiDBLite consensus disorder prediction 214 229 - -
Pumo3g01875 267 MobiDBLite consensus disorder prediction 121 164 - -
Pumo3g01875 267 SUPERFAMILY Leucine zipper domain 220 251 IPR046347 GO:0003700|GO:0006355
Pumo3g01875 267 MobiDBLite consensus disorder prediction 71 86 - -
Pumo3g01875 267 MobiDBLite consensus disorder prediction 47 95 - -
Pumo3g01875 267 FunFam BZIP transcription factor 218 252 - -
Pumo3g01875 267 Gene3D - 219 254 - -
Pumo3g01875 267 PANTHER BASIC LEUCINE ZIPPER 63 1 250 - -
Pumo3g01875 267 MobiDBLite consensus disorder prediction 119 241 - -
Pumo3g01875 267 Pfam bZIP transcription factor 219 250 IPR004827 GO:0003700|GO:0006355
Pumo3g01875 267 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 223 238 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01875 Pumo-Chr3 29807864 29810382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01875 1 265 bZIP Transcription Factor Family AT5G28770 40.000 2.12e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pumo3g01875 bZIP_1 7e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01875 K25784 - gmx:778135 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01875 3 29807864 29810382 Pumo3g01875 3 29807864 29810382 ECH
Pumo5g03779 5 87774815 87780929 Pumo3g01875 3 29807864 29810382 PCT