Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01872 ATGGCAGCAGGTAATAGTAGCTCGGAGGGGTTGGGCGATGATTTCTTCGAACAGATCTTAGCAGTGCCTGAAGCCCCAGTTGGATATGGCAGAACGGTAGCCAGTGACGTCGGAATGTTGCAATTGGGCTCCACAAGAGCTGGTTTAATGCCTCTGGGCTTGAATTTGGAGCAAGCTGCCTTTCTAAGACACCAAGATTCCAGAAACTTAGTTGACAACGTTGAAGCCAACAACATTCACCACCACCACCACCACCACCTCACTCTCCATAATAACAATACCACCTCCTCATCACCCTCTTCCACTGCACCAATCACCGATAGGGATTCGATGCATATGAGGGGTATGTTTTCAGCGTTTGGACAATTGCATACTCCAACTCTTGCTCCCTCTGTCCGCCCCACGCTGCCATCGCTTACACCACCTCCTCAGCCCCAACTGCACCTCCACCATCATAACCAACAGGCGTTTCAGGGCCAGGCAGTAGCAGCACCAGCATCAATGACTGCTGCGCCACAACCACCTGGTATCCGCCCTCGTGTGAGAGCAAGAAGAGGACAAGCAACAGATCCCCACAGCATTGCTGAGAGGTTGCGTCGTGAAAGAATCGCTGAAAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACGGACAAAGCGGCGATGCTTGATGAAATTGTGGATTATGTGAAGTTCCTAAGGCTCCAGGTTAAGGTCCTGAGCATGAGTAGACTGGGGGGAGCTGGTGCAGTTGCTCAGCTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGCAGGGGGAGGACATAGAAGGTGGGGCCAATGAGCAAGCCTGGGACAAGTGGTCCAATGATGGCACAGAACAACAGGTGGCTAAACTTATGGAAGAAGATGTTGGAGCAGCTATGCAATTTCTTCAGTCCAAGGCACTTTGTATCATGCCCATATCTCTAGCCTCAGCCATTTTTCGTATGCCTCAATCAGAAGCATCAACAGGCAATCAGGCATCAAGCCTGAATCTAACAGTCACTGATATATAG 1047 0.5033 MAAGNSSSEGLGDDFFEQILAVPEAPVGYGRTVASDVGMLQLGSTRAGLMPLGLNLEQAAFLRHQDSRNLVDNVEANNIHHHHHHHLTLHNNNTTSSSPSSTAPITDRDSMHMRGMFSAFGQLHTPTLAPSVRPTLPSLTPPPQPQLHLHHHNQQAFQGQAVAAPASMTAAPQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDKAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEQGEDIEGGANEQAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPQSEASTGNQASSLNLTVTDI 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01872 348 Gene3D - 182 244 IPR036638 GO:0046983
Pumo3g01872 348 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 70 322 - -
Pumo3g01872 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
Pumo3g01872 348 MobiDBLite consensus disorder prediction 82 104 - -
Pumo3g01872 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 246 IPR036638 GO:0046983
Pumo3g01872 348 SMART finulus 193 242 IPR011598 GO:0046983
Pumo3g01872 348 Pfam Helix-loop-helix DNA-binding domain 192 236 IPR011598 GO:0046983
Pumo3g01872 348 MobiDBLite consensus disorder prediction 90 104 - -
Pumo3g01872 348 MobiDBLite consensus disorder prediction 168 191 - -
Pumo3g01872 348 FunFam Transcription factor bHLH66 184 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01872 Pumo-Chr3 29795165 29800717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01872 157 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 76.471 2.82e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g01872 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01872 - - vun:114189791 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01872 3 29795165 29800717 Pumo3g01872 3 29795165 29800717 ECH