Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01871 ATGATTAACTTCGAAGAAACCGAGTTGCGACTCGGCCTCCCTGGCGGGTCTGCGAGTGATCACAGCGAGTTAACACTCAAGGGCAGTGGTGGCAAGAGAAACTTCTCCGAAACTGCTTCTGTTGATTTGAAGCTTAATCTTTCTTCCAATAATGACTCTGCAGCCTTGGATTCACCCTCATCTGTGTCTACAGAGAAGCCCAAAGAGAAGACTACTATCACTGCTGCAACTCCTCCTCCAGCTAATGACCCAGCAAAACCACCTGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTGAGATCTTTTAGGAAGAACATTGTGAGTAGGAACAACAATGAAGAGGAGGGAGAGAAGAGTGGAGCAGCTTTTGTGAAGGTGAGCATGGATGGTGCACCGTATCTACGAAAGGTGGACATCAAGTTGTACAAGAGCTACCAGGAGCTGTCAGATGCGCTGGCTAAGATGTTCAGTTCCTTCACAATTGGCAAGTGTGGGTCCCAAGGGATGAAGGACTTTATGAATGAGACCAAATTGATGGACCTTTTGAACGGCTCTGATTATGTACCAACATATGAAGACAAGGACGGAGACTGGATGCTCGTCGGTGATGTGCCCTGGGAGATGTTTGTTGAGTCATGCAAGCGCCTCCGCATAATGAAAGGTTCCGAGGCAATTGGGCTTGCGCCAAGAGCCGTGGAAAAGTGCAAGAACAGAAGCTGA 720 0.4875 MINFEETELRLGLPGGSASDHSELTLKGSGGKRNFSETASVDLKLNLSSNNDSAALDSPSSVSTEKPKEKTTITAATPPPANDPAKPPAKAQVVGWPPVRSFRKNIVSRNNNEEEGEKSGAAFVKVSMDGAPYLRKVDIKLYKSYQELSDALAKMFSSFTIGKCGSQGMKDFMNETKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01871 239 Pfam AUX/IAA family 6 230 IPR033389 -
Pumo3g01871 239 ProSiteProfiles PB1 domain profile. 121 221 IPR000270 GO:0005515
Pumo3g01871 239 SUPERFAMILY CAD & PB1 domains 118 220 - -
Pumo3g01871 239 MobiDBLite consensus disorder prediction 48 92 - -
Pumo3g01871 239 FunFam Auxin-responsive protein 116 231 - -
Pumo3g01871 239 Gene3D - 115 233 - -
Pumo3g01871 239 MobiDBLite consensus disorder prediction 48 78 - -
Pumo3g01871 239 MobiDBLite consensus disorder prediction 1 35 - -
Pumo3g01871 239 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 226 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01871 Pumo-Chr3 29783063 29786545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01871 81 224 B3 DNA Binding Superfamily AT3G61830 28.472 4.92e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo3g01871 AUX_IAA 2.6e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01871 K14484 - gmx:100781847 384.415