Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01865 ATGGTGTCCAGCCAGGTGGTGAAGGTGAAGAGAGATACGCTACGACCATGCATGACATGCCCTCTCTGCCATAAGTTATTCAGAGATGCCACCACCATCTCTCTCTGTCTTCACACCTTTTGCAGGAAGTGCATATATGAGAAATTCTCAGATGAGGAGATGGATTCCTGTCCTGTGTGCAATATTGATCTAGGCTGCCTTCCGGTGGAAAAACTCAGGCCAGACCACAATTTGCACGATATAAGGGCAAAAATATTCCCTTTTAAAAGAAAAAAGATCAAGGCCCAAGAAGTTTTGTCTTCAATATCATTGCCTGCAAAAAGGAAGGAAAGATCACTTTCATCATTGGTAGTCAGTGCTCCCAAAGTTTCAATGCAACCTGGCTTTACAGGAAAGAGAACAAAAACCAGTACAAGAAAGGCTGCTGCTTTACGTGGATGCAGTTTTCTTCTTGACGAATCCATAAAGAAGGAAGAAACAAATGGTGAAGATAATATGGATTCTTCCATGCCTGAGCCTTCTAAGAAGCATAAGCCCAATGAACATACAGAGAACAGTGTGGAACATACAGAAGGGAAGGTTGATCTCTGGACACCACTGAACTGTCTTGTTGAAGCTGCCAACAGAACAAAGTCCTCCAGGTCAAATTCACAAGCAACTCCTCTTGCCAAATTAGAGTCCCCAACTACTCCTCATGGTGGACAAGATACTTCTGAAATTACACCCAAAACAGACCTACCCGCTTCTGTCCAGAGTGAATTAAACATTCCAAAATCCAAAAATAAGGATACTGGGCATAAAACAATATTTGGAGATGACAAGGATGCAAACAGCTTGCCTTCAGCACCAGTGAAGCGAAGAAGGTTACGTCCTGCTGGTCAGAAAAGAGTTGCAGCATCTGAGATGTCTGCCTCATCCCCAGCCCCACTAGATGCAACAGGTGGCAAGTGCAACAGAAAAAATAGTCCCATTTGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATGCTCCCTTGCCACAGATCTCAGCATGTTACTTAAGAATAAAGGATGGTAATGTGCCCGTCTCATTTATTCAAAAGTACCTCGTGAAGAAACTTAATCTTGCCAGTGAAGCAGAGGTGGAAATAATGTGCCGGGGTCAGCCAGTGCTCCCATCTTTACAACTGCATAATTTAGTAGATCTATGGTTCCGGACAGCATCAACCTCAAAAAAGATACCAGCATCAGTGGGGTCCTCAGCCAAAGATTTTGTGATGGTTTTATCGTATTGTCGAAAGGCCTTGCCTTCTTGA 1299 0.4357 MVSSQVVKVKRDTLRPCMTCPLCHKLFRDATTISLCLHTFCRKCIYEKFSDEEMDSCPVCNIDLGCLPVEKLRPDHNLHDIRAKIFPFKRKKIKAQEVLSSISLPAKRKERSLSSLVVSAPKVSMQPGFTGKRTKTSTRKAAALRGCSFLLDESIKKEETNGEDNMDSSMPEPSKKHKPNEHTENSVEHTEGKVDLWTPLNCLVEAANRTKSSRSNSQATPLAKLESPTTPHGGQDTSEITPKTDLPASVQSELNIPKSKNKDTGHKTIFGDDKDANSLPSAPVKRRRLRPAGQKRVAASEMSASSPAPLDATGGKCNRKNSPIWFSLVASEDQKGDAPLPQISACYLRIKDGNVPVSFIQKYLVKKLNLASEAEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKIPASVGSSAKDFVMVLSYCRKALPS 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01865 432 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Pumo3g01865 432 SMART ring_2 20 60 IPR001841 -
Pumo3g01865 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 110 IPR013083 -
Pumo3g01865 432 MobiDBLite consensus disorder prediction 208 258 - -
Pumo3g01865 432 MobiDBLite consensus disorder prediction 154 193 - -
Pumo3g01865 432 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Pumo3g01865 432 Gene3D - 308 408 - -
Pumo3g01865 432 CDD RING-HC_PCGF 18 61 - -
Pumo3g01865 432 MobiDBLite consensus disorder prediction 154 191 - -
Pumo3g01865 432 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Pumo3g01865 432 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 5 430 IPR044807 GO:0004842
Pumo3g01865 432 SUPERFAMILY RING/U-box 14 84 - -
Pumo3g01865 432 MobiDBLite consensus disorder prediction 259 273 - -
Pumo3g01865 432 MobiDBLite consensus disorder prediction 208 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01865 Pumo-Chr3 29720933 29726612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01865 1 351 C3H Transcription Factor Family AT2G30580 46.070 3.39e-90 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01865 K16277 - gmx:100783999 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01865 3 29720933 29726612 Pumo3g01865 3 29720933 29726612 ECH