Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01859 ATGACTACTGCAGCGCAGCCCAAGGCCAAGAAAAAGGCGTCGTCCAAGAAGCCTCTCTCCCACCCTCCCTTCGCCGTGATGATAGTGGAGGCGATTACGAGTTTGAAGGAGAGAACCGGTTCGAGCCAATACGCGATAACCAAATTCATCGAAGGGAAGCACAAGGAGTTGCCTCCAACCTACAAGAAGCTCGTCCTCGTTCATCTCAAGAAGTCCGTTGCTGCTGGCAAGCTCGTTAAGGTCAAAAACTCTTTCAAGCTTGCACCGACCAAACCTGCTCCGGTTAAACCCGCTGCTCCTAAGAAGCCCAAAGCTGCGACTAAGCCCGCTGCCAAGCCCAAAGCTGCACCTAAGAAGAAGGCCGTTGCCAAGCCCAAGGCCAAAACTGCAGCCGCAGCTGCCAAGCCCAAGGCCAAGCCTGCTAAGGCAGCGGCCAAGAAGGTCGCTGCTAAGCCTGCCAAGAAGACTCCCGTGAAGAAGCCCAAGAGCGTCGTGAAGAAACCTAAGAGCGTGAAATCGCCAGCGAAGAAGGCTAAGAAGTGA 543 0.547 MTTAAQPKAKKKASSKKPLSHPPFAVMIVEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLVHLKKSVAAGKLVKVKNSFKLAPTKPAPVKPAAPKKPKAATKPAAKPKAAPKKKAVAKPKAKTAAAAAKPKAKPAKAAAKKVAAKPAKKTPVKKPKSVVKKPKSVKSPAKKAKK 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01859 180 SUPERFAMILY "Winged helix" DNA-binding domain 17 102 IPR036390 -
Pumo3g01859 180 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo3g01859 180 MobiDBLite consensus disorder prediction 1 20 - -
Pumo3g01859 180 Gene3D - 16 93 IPR036388 -
Pumo3g01859 180 CDD H15 20 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo3g01859 180 PRINTS Histone H5 signature 159 178 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pumo3g01859 180 PRINTS Histone H5 signature 137 154 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pumo3g01859 180 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pumo3g01859 180 PRINTS Histone H5 signature 107 121 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pumo3g01859 180 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pumo3g01859 180 PANTHER HISTONE H1 7 162 - -
Pumo3g01859 180 MobiDBLite consensus disorder prediction 87 180 - -
Pumo3g01859 180 Pfam linker histone H1 and H5 family 21 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo3g01859 180 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo3g01859 180 MobiDBLite consensus disorder prediction 140 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01859 Pumo-Chr3 29676751 29677652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01859 22 148 Single Myb Histone (SMH) Gene Family AT1G72740 29.771 1.05e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01859 K11275 - gmx:100810590 138.658