Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01852 ATGGGGACTCCAGTGAATATTATTGTGGGTTCTCATGTCTGGATTGAAGACCCAGAGGTATCTTGGATTGATGGACAGGTATTAAAAATCACTGGAAAGGATGCTGAAATTGAAACTACCAATGGACAAAAGGTTGTTGCAAATTTATCAAAAATATATCCTAAGGATATGGAAGCTCCTCCTGGTGGAGTGGATGATATGACTAAACTGTCCTATTTGCACGAGCCTGGAGTCCTGCAGAACTTAAAAGCTAGATATGAATTGAATGAAATATATACTTATACTGGAAATATTCTGATTGCAATAAATCCATTCCAAAGACTACCTCATATTTATGGTGCGCACATGATGCAACAATACAAGGGAGCGCCATTTGGAGAATTAAGCCCTCATGTGTTCGCAGTTGCTGATGTTGCATATAGGGCGATGATTAACGAAAAAAAAAGCAATTCAATTCTAGTCAGTGGGGAAAGTGGTGCTGGCAAAACTGAAACTACAAAAATGCTTATGCAGTACCTGGCTTTCTTAGGTGGTAGGGCTGGTACTGAAGGGCGAACAGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGGAATGCTAAAACTGTCAGGAATAACAATTCTAGCCGTTTTGGTAAGTTTGTTGAGATCCAATTTGATAAAAGTGGAAGAATATCAGGAGCAGCCATCCGAACATATCTTCTAGAGAGATCTCGGGTTTGCCAAATTAATGATCCTGAAAGGAACTACCATTGCTTTTATCTTCTTTGTGCTGCACCACAGGAGGAAATTGAGAAATACAAATTAGGAAATCCTAGATCATTTCACTACCTTAACCAGTCAAAATGCTATGAACTGGCTGATATAAGTGATGCTCGTGAATATCTTGCCACCCGGAGAGCTATGGATATTGTTGGAATAAGTCAAAAAGATCAGGAAGCCATTTTCAGAGTTGTTGCTGCAATTCTTCATATTGGTAATATTGAATTTGCCAAAGGAAAAGAAGTTGATTCATCAGTTCCAAAAGATGACAAAGCCAAATTCCACCTGAAAACAACTGCTGAGCTTCTCATGTGTGATGCTGATGCCTTGGAAGACGCATTATGTAAGCGTGTCATGATCACCCCTGAAGAAGTTATAAAACGGAGCCTTGACCCCCAAAGTGCAGCAGTCAGTAGAGATGGATTGGCAAAAACAATCTATTCTCGGCTATTTGACTGGTTGGTGGACAAGATTAATAATTCAATTGGACAAGACCCCAATTCTAAATCTTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAATCTAACAGTTTCGAGCAATTTTGCATTAATTTCACAAATGAGAAGTTGCAGCAACATTTCAATCAGCACGTGTTTAAAATGGAACAAGAAGAATATACAAAGGAGCAGATCAATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTTTTGGACCTTATTGAGAAGAAACCTGGAGGAATCATTGCGCTCCTCGATGAAGCTTGCATGTTTCCGAAGTCAACTCATGAAACATTTGCAAACAAGTTTTATCAAACATTTAAGAATCACAAGCGCTTTATTAAGCCAAAATTGTCTCGAACAGATTTCACAATTGCTCATTATGCTGGGGAGGTATTATACCAGTCTGACCAATTTTTAGACAAAAACAAGGATTATGTGGTTCCTGAACATCAAGATTTATTGAGTGCTTCCAAATGTTCTTTTGTATCTGGCCTTTTTCCACCACTTCCAGAAGAGACATCAAAATCTTCCAAATTTTCTTCAATTGGTTCTCGTTTTAAGCTACAACTACAAAGCCTAATGGAGACATTAAATTCTACAGAACCCCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCCATTTTCGAGAATGTCAATATTATGCAACAACTTCGCTGTGGTGGTGTTTTGGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACTCGCCGTGCTTTCTTTGAATTTATAAACAGATTTGGCCTCCTTGCTCCAGAGGCCATGGAAGCAAACTGTGATGAAAAGACTGGTTGCCAAAAGATTCTGGAAAAGATGGGGCTTCAAGGATATCAGATTGGAAAAACAAAGGTATTCTTGAGAGCAGGTCAGATGGCTGAACTAGATGCACGGAGAGCTCAAGTACTTAGTAATGCAGCAAAAGTTATCCAACGCCGCGTACGAACCCATCAAGCTCGTAAACATTATCTTGCATTGCGAAAGAAGAGCATATATGTGCAGTCTCGGTGGAGAGGAAGACTTGCGTGTAAACTCTATGAGCACTTGAGAAGGGAGGCTGCTGCTGTGAAAATTCAAAAGAACGTACGCAGATATGAAGCTAGGAAAGCCTATAAAGAACTTCATGTGTCAGCACTTACACTGCAAACAGCTATAAGGGCCGTTGCTGCTCGCAAGGAATTCAGATTTAGGAAGCAGACTAAAGCTTCCATCATTATTCAGGCTCGGTGGCGGTGCCACAAAGCTGCCTTATATTATAAGAGGCTCAAGAAAGGTGCAATAGTTACACAATGCAGATGGAGGGGGCGCGTAGCCAGGAAAGAGCTTAGGAAACTGAAAATGGCTGCAAGAGAAACTGGTGCCCTTCAAGAAGCAAAGGATAAACTAGAAAAACGAGTGGAGGAACTCACTTGGCGTCTCCAACTAGAAAAAGGTTTAAGGACCAATCTGGAAGAATCCAAAGCACAGGAGATAGCAAAAGTGCAGAATTCATTGCAGGAGATGCAGAACAAATATGAAGAAACTAATGCTCTGCTCATCAAAGAGCGAGAGAATGTGAAGAAAGTTGTTGAAGAAGCACCTCCTGTCATTAAAGAAACACAAGTTATTGTTGAAGATACACAGAAGATTGAGACACTGACCGCAGAAGTTGAGAGCCTAAAGACTTCACTCGAGTCAGAGAAACAGAAAGCTGATGACTTTGAAAGAAAATACAACGAAGCCCAAGTTTGTAGCGAAGAAAGAGGTAAAAAACTAGAAGACACGGAGAAGAAAGCTCGTCAGCTTCAAGAATCATTGACTAGTCTTCTTTTAAGACGGGAGTGCTGCTCATTTAGTAATGGAGAATATGTCAAAGCTGGTTTGGCTGAATTGGAGCATTGGTGTTATAAGGCAACAGATGAGTATGCAGGTTCAGCCTGGGATGAGCTCAAACATATTAGACAAGCTATTGGATTTCTGGTATCTATCTATTTTTGGCTACATACCATCTGGCACTATTTTTTTTTCCTAATGATCAGCGAAAGGAAAATATGA 3330 0.4015 MGTPVNIIVGSHVWIEDPEVSWIDGQVLKITGKDAEIETTNGQKVVANLSKIYPKDMEAPPGGVDDMTKLSYLHEPGVLQNLKARYELNEIYTYTGNILIAINPFQRLPHIYGAHMMQQYKGAPFGELSPHVFAVADVAYRAMINEKKSNSILVSGESGAGKTETTKMLMQYLAFLGGRAGTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPQEEIEKYKLGNPRSFHYLNQSKCYELADISDAREYLATRRAMDIVGISQKDQEAIFRVVAAILHIGNIEFAKGKEVDSSVPKDDKAKFHLKTTAELLMCDADALEDALCKRVMITPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVDKINNSIGQDPNSKSLIGVLDIYGFESFKSNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKFYQTFKNHKRFIKPKLSRTDFTIAHYAGEVLYQSDQFLDKNKDYVVPEHQDLLSASKCSFVSGLFPPLPEETSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGLLAPEAMEANCDEKTGCQKILEKMGLQGYQIGKTKVFLRAGQMAELDARRAQVLSNAAKVIQRRVRTHQARKHYLALRKKSIYVQSRWRGRLACKLYEHLRREAAAVKIQKNVRRYEARKAYKELHVSALTLQTAIRAVAARKEFRFRKQTKASIIIQARWRCHKAALYYKRLKKGAIVTQCRWRGRVARKELRKLKMAARETGALQEAKDKLEKRVEELTWRLQLEKGLRTNLEESKAQEIAKVQNSLQEMQNKYEETNALLIKERENVKKVVEEAPPVIKETQVIVEDTQKIETLTAEVESLKTSLESEKQKADDFERKYNEAQVCSEERGKKLEDTEKKARQLQESLTSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVSIYFWLHTIWHYFFFLMISERKI 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01852 1109 Coils Coil 968 1009 - -
Pumo3g01852 1109 Gene3D - 667 733 - -
Pumo3g01852 1109 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Pumo3g01852 1109 SMART iq_5 853 875 IPR000048 GO:0005515
Pumo3g01852 1109 SMART iq_5 805 827 IPR000048 GO:0005515
Pumo3g01852 1109 SMART iq_5 757 779 IPR000048 GO:0005515
Pumo3g01852 1109 SMART iq_5 830 852 IPR000048 GO:0005515
Pumo3g01852 1109 SMART iq_5 734 756 IPR000048 GO:0005515
Pumo3g01852 1109 SMART iq_5 782 804 IPR000048 GO:0005515
Pumo3g01852 1109 FunFam unconventional myosin-Va 834 881 - -
Pumo3g01852 1109 FunFam Myosin heavy chain 252 307 - -
Pumo3g01852 1109 CDD MYSc_Myo11 76 720 IPR036018 -
Pumo3g01852 1109 Gene3D - 252 310 - -
Pumo3g01852 1109 ProSiteProfiles IQ motif profile. 735 762 IPR000048 GO:0005515
Pumo3g01852 1109 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Pumo3g01852 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 883 IPR027417 -
Pumo3g01852 1109 Gene3D - 439 623 - -
Pumo3g01852 1109 FunFam unconventional myosin-Va 786 833 - -
Pumo3g01852 1109 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g01852 1109 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g01852 1109 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g01852 1109 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g01852 1109 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g01852 1109 Pfam Myosin N-terminal SH3-like domain 9 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Pumo3g01852 1109 Coils Coil 1017 1037 - -
Pumo3g01852 1109 Coils Coil 877 904 - -
Pumo3g01852 1109 Coils Coil 916 950 - -
Pumo3g01852 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 785 IPR027417 -
Pumo3g01852 1109 Gene3D - 785 832 - -
Pumo3g01852 1109 Gene3D - 734 784 - -
Pumo3g01852 1109 Gene3D - 833 882 - -
Pumo3g01852 1109 SMART MYSc_2a 57 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g01852 1109 Pfam DIL domain 1033 1088 IPR002710 -
Pumo3g01852 1109 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g01852 1109 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Pumo3g01852 1109 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Pumo3g01852 1109 FunFam unconventional myosin-Va 737 785 - -
Pumo3g01852 1109 FunFam Class V myosin 439 580 - -
Pumo3g01852 1109 ProSiteProfiles Dilute domain profile. 965 1109 IPR002710 -
Pumo3g01852 1109 PANTHER MYOSIN 54 1036 - -
Pumo3g01852 1109 SMART DIL_2 1022 1107 IPR002710 -
Pumo3g01852 1109 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g01852 1109 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Pumo3g01852 1109 FunFam Myosin 2 312 427 - -
Pumo3g01852 1109 ProSiteProfiles IQ motif profile. 831 857 IPR000048 GO:0005515
Pumo3g01852 1109 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Pumo3g01852 1109 Pfam IQ calmodulin-binding motif 808 827 IPR000048 GO:0005515
Pumo3g01852 1109 Pfam IQ calmodulin-binding motif 832 852 IPR000048 GO:0005515
Pumo3g01852 1109 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Pumo3g01852 1109 Pfam IQ calmodulin-binding motif 785 804 IPR000048 GO:0005515
Pumo3g01852 1109 Gene3D Kinesin motor domain 65 662 IPR036961 -
Pumo3g01852 1109 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01852 Pumo-Chr3 29587143 29604125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01852 1031 1086 Myosins gene family AT1G54560 92.857 4.50e-28 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01852 K10357 - gmx:100816792 1984.53