Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01847 ATGGAGGGAAAAACTGAGGATGAAGTGGTGGATATTGAGAGTGCTTCTAGTGGTTCTTTCAATGATGATTCAGATGATGAGGAATCTTTAGTTCCTGAAATAGATGACGGAGTGCATCTTGAGGAGCCGTTAACAGAAGAGGAAATACAAGATCTTATTTCTGAGTTGTTAGAAGTGGAGAGTAAGGCTGCAGAGGCTCAAGAAGCTCTTGAAGAGGAGTCTCTTTCTAAAGTGGAGAGTGAAGTTAGACAAGAATTGAAGCAAAATCTTCAGGGGGATGATTTGGAAACTGCTGTTGCTGATGAGATGGCTACTTTTAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAAACCGAAAGTGCCGACTTACTGGAACAACTTGATGGGGCTGGCATTGAGCTTCCTAGCCTTTATAAGTGGATTGAAAGAGAAGCTCCTAATGTTTGCTCCACTGAAGCATGGAAAAAGAGGAATCATTGGGTTGGCTCTCTGGCAACTGGTGAAATTGCTGAGTCGATTGCTGATGCTGAGAAACATCTGCAAGTAAACAGACCTGTTAGAAGGCGACATGGTAAATTATTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAACTTTGTGATGAAACCCAGGACCAGGAGCCAGTAAAGAATGAAACTAAAGGGGATTGGGATCTGTTCAATAAATTAGTTTCTGATGGGAGTGGCATTGATGCTTCATTTGGCAGTAAGCATTGGGCTTCTGTTTATTTGGCCAGCACTCCTCAGCAAGCTGCCTTGATGGGACTCAAATTTCCTGGAGTTGATGAGGTGGAGGAGATTGATGATGTTGATGGCAATTCTACGGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAATTAGATCTTTCTGACGAGCAAAGGAGACAATTTAAAAAGGTCAAAGAAGAGGATGATGCAATTGTTGATAGGAAACTTCAAATCTGTTTGAAACATAGGAGGCATAAAAGGAAAAGTAGACAGCGAGAAATTAGCACACCTGTCCTGTTGACGGAGAACCACATACAGAAGCCTTCATCTGTTGATCATTTAAGCCCTGTTATGAAGGAAGGAACTAGCGATGATGGGAAAATTGTGTCTGACAATGGCAAGGATACATGTGTGCTTATGGAGGCTGATAAAATTAAAGGTTTTGATGCGAGTCATCATCTTGACAATGAAAAGCTTACGAGTACTGGTGGTTTGTCAGATCCACCCAAATCTTCATCGGATGATGTTATTGAATACAGAGGAATCAAACGTGTAAACAGTGGTGAGCTTGATGCTGACAATAAAAAGTGTCGGATTGTTATTATTGACAGTGATAATGAAGCAGAGGTCACTGAAAAGAAATTAGATTGCAATACTCAAGAGGTAAAAGAAGATTTATGTAACAATGGTGCTGATTCTCTTCCTTCGGAGTGTCTGGATGGAAAATTTTGGTGCACAGTTTGTGATAAAGTGGCTCTTGAAGTGCATCCACACCCTTTCTTGAAAGTGATTACTTGTGGAGATTGCAATTGCTTATTAAAAGAAAAGACACATAAAAAGGATCTGGGGCAAGATTGTTCGGAGGGTTACTGTACATGGTGTGGGGGAAGAAGTGAATTAGTTAGTTGTAAATTATGCAATATTTTATTCTGCACCAAATGTTTAAAGAAGAATCTTGGTGTAGAATTGGTTCCTGGAACTCAGGCCACTAGCTGGCATTGTTGTTGTTGCCATCCAAATCTTTTGCAAAAACTGTCCTTGCAACTAGAGAAAGCTGTGGGGTCTGCTGATATAATAGTTTCCAGTTCTAGTAGTGATTCAGATGATTCAGATAATTCAGATGATTCAGATGATTCAGATGCAGAGATTAATGTTACAATCAGCTCCAAGCGAAGACAAAAAAAGAAGATTAGGAGGATACTTGATGATGCTGAATTAGGAGAAGAGACAAAAAGGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGCGAGGACAGTTTTCTGCTTCGTCATTTGAGATGAGCTCTGACGGCTGTAATGGGAATTTATCAGAAGGTGCAAGTGTTGAAGTTCTTGGTGATGCACTAGCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTTAGAATTCCTCCTAGCATCTCTGCTAAATTGAAGGCCCATCAGATTGCTGGAATAAGATTCATGTGGGAAAATATAATACAGTCAATCAGAAAAGTAAAGTCTGGGGATAAAGGTCTTGGATGTATTCTAGCTCATACCATGGGCCTTGGTAAAACTTTTCAGGTGATAGCTTTTTTGTACACTGCAATGAGATGTGTTGATTTGGGGTTAAGAACCACACTTATAGTTACACCCGTCAATGTGCTACATAATTGGCGGCAGGAGTTCATCAAGTGGAGACCTTCTGAGTTAAAGCCACTCAAGGTCTTCATGCTGGAAGACGTATCAAGAGATAGAAGGGCAGAATTGCTTGCAAAATGGAGAGCTAAAGGTGGTGTCTTTTTGATTGGTTATACTGCTTTCCGAAATTTGTCTTTTGGGAAGCATGTGAAAGATCGGCACATGGCCAGAGAAATTTGCCATGCTTTGCAGGATGGACCTGACATTCTTGTTTGTGATGAAGCCCATATTATAAAAAATACTAAGGCTGACGTAACTCAAGCCTTGAAACAAGTAAAATGCCAGAGAAGAATTGCGCTTACTGGATCACCTCTTCAAAACAATCTCATGGAATATTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTCGGAACCGCTTCCAAAATCCTATAGAGAATGGACAACACACTAATTCAACTCTGATTGATGTGAAAATTATGAACCAGAGGTCTCATATCCTCTATGAACAGTTAAAAGGCTTTGTTCAGAGAATGGACATGAATGTGGTGAAGAAGGATCTACCCCCCAAAACTGTCTTCGTGATAACTGTCAAGCTTTCTCCCTTGCAGAGAAAATTGTACAAGAGATTCCTTGATGTGCATGGGTTCACTACGCAGGTGCATCCTGAAATGTTAAGGAAGAGATGTTTTTTTGCTGGGTACCAGGCATTAGCTCGGATATGGAATCACCCTGGGATCTTGCAGTTGACAAAAGAAGTCAAGGACTATGTAAAACACGAAGATGCTGTTGAGAATTTTCTTGTGGATGATAGTTCCAGTGATGAAAATTCTGATTATAATGTACTTGCTGGAGAGAAGATGAGGTATGCAAATGACTTGCTGCAAAGGAAAGATGATAATGGCTTTTTCCTGAAGGGTTGGTGGAATGATCTTCTTCATGGAAAAATTTATAAAGAGATCGATCACAGTGGCAAAATGGTTTTGCTAATGGAGATACTAACCACGAGTTCTGATGTGGGCGATAAGGTGTTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATTGAACTTTATCTCTCAAGGATACCTCGACGTGGCAAACGAGGGAAGTTTTGGAAGAAGGGAAAAGATTGGTATAGGTTGGATGGAAGGACAGAGAGTTCTGAGAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCCTTGAATAAGAGGGTAAAGTGCACTCTGATTTCAACCAGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCCATCTATCGATCATGGAGGTATGGGCAGACAAAGCCTGTGTTTGCTTATAGATTGCTGGCTCATGGAACTATGGAAGAGAAGATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGACAACAGGTGCATAGGACCATTTCTAAAGAAGAAATGCTGCATCTCTTTGAGTTTGGTGATGATGACAACCCTGAGACTTTGGCTGATCTAAGTCAAGAAAATGGGCATCAAGACAACCCAATTTTGGTTGGGCATTCACTGAAACACACAGCACCACATTCAAATGGAAGTAGTTATTCTGATAAGTTAATGGAAAGCTTACTTAGCAAGCATCATCCACGGTGGATTGCCAATTATCATGAACATGAATCCCTGTTACAAGAAAATGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTTTACCGGAAGTCGTTGGAATGGGAAGAAGTGCAGAGAGTACCACTTGGTGAGTCTATTATTCCTGAACAGAAGCCAGAAATGCCAAATGCAATGCCCCAGAATGTATCACAAAGCTGCAGCATCTTGCCAAGTAAACTAAGCAGACGTTTCACGACGCGGAAATGCACCAACCTTGCGCATATGTTGACACTTCGAAGCCAAGGAACAAAATTTGGATGCAGTACTGTCTGTGGGGAATGCGCCCAGGAGATTAGGTGGGAAGACTTGAAGAAGAGATAG 4485 0.412 MEGKTEDEVVDIESASSGSFNDDSDDEESLVPEIDDGVHLEEPLTEEEIQDLISELLEVESKAAEAQEALEEESLSKVESEVRQELKQNLQGDDLETAVADEMATFKEEWEAVLDDLETESADLLEQLDGAGIELPSLYKWIEREAPNVCSTEAWKKRNHWVGSLATGEIAESIADAEKHLQVNRPVRRRHGKLLEEGASGFLQKKLCDETQDQEPVKNETKGDWDLFNKLVSDGSGIDASFGSKHWASVYLASTPQQAALMGLKFPGVDEVEEIDDVDGNSTDPFIAAAIANERELDLSDEQRRQFKKVKEEDDAIVDRKLQICLKHRRHKRKSRQREISTPVLLTENHIQKPSSVDHLSPVMKEGTSDDGKIVSDNGKDTCVLMEADKIKGFDASHHLDNEKLTSTGGLSDPPKSSSDDVIEYRGIKRVNSGELDADNKKCRIVIIDSDNEAEVTEKKLDCNTQEVKEDLCNNGADSLPSECLDGKFWCTVCDKVALEVHPHPFLKVITCGDCNCLLKEKTHKKDLGQDCSEGYCTWCGGRSELVSCKLCNILFCTKCLKKNLGVELVPGTQATSWHCCCCHPNLLQKLSLQLEKAVGSADIIVSSSSSDSDDSDNSDDSDDSDAEINVTISSKRRQKKKIRRILDDAELGEETKRKIAIEKERQERLKSLRGQFSASSFEMSSDGCNGNLSEGASVEVLGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLRTTLIVTPVNVLHNWRQEFIKWRPSELKPLKVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRHMAREICHALQDGPDILVCDEAHIIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLIDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTTQVHPEMLRKRCFFAGYQALARIWNHPGILQLTKEVKDYVKHEDAVENFLVDDSSSDENSDYNVLAGEKMRYANDLLQRKDDNGFFLKGWWNDLLHGKIYKEIDHSGKMVLLMEILTTSSDVGDKVLVFSQSIPTLDLIELYLSRIPRRGKRGKFWKKGKDWYRLDGRTESSERQKLVERFNEPLNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRSWRYGQTKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDDNPETLADLSQENGHQDNPILVGHSLKHTAPHSNGSSYSDKLMESLLSKHHPRWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPLGESIIPEQKPEMPNAMPQNVSQSCSILPSKLSRRFTTRKCTNLAHMLTLRSQGTKFGCSTVCGECAQEIRWEDLKKR 1494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01847 1494 Coils Coil 1376 1396 - -
Pumo3g01847 1494 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1137 1308 IPR001650 -
Pumo3g01847 1494 ProSiteProfiles ADD domain profile. 479 611 IPR025766 -
Pumo3g01847 1494 SMART helicmild6 1163 1260 IPR001650 -
Pumo3g01847 1494 Pfam SNF2-related domain 754 1055 IPR000330 GO:0005524|GO:0140658
Pumo3g01847 1494 PANTHER RAD54-LIKE 17 1492 IPR044574 GO:0016887
Pumo3g01847 1494 CDD SF2_C_SNF 1128 1271 - -
Pumo3g01847 1494 CDD ADDz_ATRX 491 585 - -
Pumo3g01847 1494 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 754 937 IPR014001 -
Pumo3g01847 1494 Coils Coil 107 134 - -
Pumo3g01847 1494 Gene3D - 997 1339 IPR027417 -
Pumo3g01847 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 718 986 IPR027417 -
Pumo3g01847 1494 MobiDBLite consensus disorder prediction 402 422 - -
Pumo3g01847 1494 MobiDBLite consensus disorder prediction 355 375 - -
Pumo3g01847 1494 MobiDBLite consensus disorder prediction 607 629 - -
Pumo3g01847 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 992 1324 IPR027417 -
Pumo3g01847 1494 Gene3D - 705 986 IPR038718 -
Pumo3g01847 1494 Coils Coil 49 76 - -
Pumo3g01847 1494 Pfam Helicase conserved C-terminal domain 1135 1260 IPR001650 -
Pumo3g01847 1494 SMART ultradead3 728 949 IPR014001 -
Pumo3g01847 1494 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01847 Pumo-Chr3 29476862 29503150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01847 762 1313 RAD5 or RAD16-like Gene Family AT5G43530 25.786 5.35e-32 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo3g01847 SNF2_N 4.5e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01847 K10779 - gmx:100794911 2732.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01847 3 29476862 29503150 Pumo3g01847 3 29476862 29503150 ECH