LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g01843	ATGACAATTACTTTTGGAAGTATCATGGCTCCTCCTAATCCAAGAGTCATTAAGGCTTATAATGCTATGAGGCCCTTAGGAATTTCTGATGAAGAGGTGAAACCGGTGTTGAAAAATTTGTTAGAATTGTATGATAGAAACTGGGAACTTATTGAAGAAGACAATTATCGTACACTTATAGATGCATACTTTGAGTTAAAGGAAGATAAGCAAGCAGAAGGTAAGAGAAAAGCTCCTATCAGTTATCTTGATGGGAAAAGGCCAAAACAGAAACTGCACTTGGTAGATGGAGATGACCAGGTTTCATCAACTGACAACTCAAGACAAGGGTTGCCTGTAGAAGACACGGAAATACCTCCCAGCGCTTTTAAACAGGAAATCATTAAACCTTCTCAAACCTCCATTGGACATATGGAGCCCACAACCAGTTCACAAGCATTGCAGACAATGTCGAGTGCGGTAGAAAGGATCTCAACTTTACCTTGCATGGCTGCTAGAGATAGAAAATTGCATCGTGATAAAGCATCAGCTGCAGGGCATTGTGAAGATCCAATTGATGAACCAAGCAATCCTCGCATCCAGAGGAAAAATATATCAAGTGATCATCATCAGAAGGAGCTGATGACACCAAGAACTGAGAAACTTAAATTACATCTTGGACCTGTTTCAACGAGTTACAATGGCTCATCTGATTCTTCGAATGGAAATCGTCGCGTCAAATCTTTATCAGCTCTGTATCAGAATGTGCACAAGAAAGATGGTAGCTCAGCATGCAATAATAACAACAGAATTCAGAAGGGTAATATTGATATTGCTTCTTCACCTATGGGAGAAATTAAAATTTCTTTAAACTGCAATGCTGCTTTGAGACAACCAAACTTCCGTATTCCTGATTTGGATGCTGTTATGAAGTCCATGGAGGAGAAATACCTGAAGGCTTACAAGATCGTCGAGCCTCAATCATCTATGGTGAAGCTATTAGATGATTTATGTGCAAGTTACTTGAAGCTGGGCTTCAATTTAAATCGAAAGGGGTCAACTCCCGAGTATACTAATTCACGCAATGTGGCATGTCTGCCACCGCAAGGTGTTACTGAAGATGACAAGAATTCCTTTCACTTTCTCGATGACATAACAAAAGGTTCAGAGAATGTTAAAATATCATTGTTAGATGACACTGGAAGTGAGGAGTTGCCAAAGTTTAATTACATACCCTATAATGTAATATATCAGGATGCTAACGTAAACATTTCACTTGCTCGTATTGCGGATGAGGGTTGCTGTGCTGATTGTGCTGGCGACTGTCTTTCCTTATCACTTCCTTGTGCATGTTCTCAAGAAACAGGTGGAGAGTTTGCTTATACTCCCCAAGGCTTGTTGAAAGAAGATTTTTTAAAAGCTTGCATGTCTATGAAATTGGAACCTCAAGAGCATCATTTTGTGTATTGCCAAGAATGCCCACTGGAGAGGTCTAAGAATGACATCATGCCCGAACCATGCAAGGGGCATCTGGTTAGGAAGTTTATCAAGGAATGCTGGAGGAAATGTGGTTGTGACATGCAGTGTGGAAATCGGGTAGTGCAACGAGGTTTAAGATGTAAATTGCAGGTTTTTGTGACTGGAGAAGGAAAGGGATGGGGCGTCAGAACACTAGAAGATTTGCCTAAGGGATGTTTTGTATGTGAATATGCTGGGGAAATATTAACCAATACAGAATTATATGAAAGGATTATGCAGAATAGCGGCAATGACAGGCATACATATCCTGTAACCCTTGATGCAGACTGGGGCTCGGAAGGGGTGTTAAAGGATGAGGAGGCACTATGCTTAGATGCAACATATAATGGAAATGTTGCAAGGTTTATCAATCATAGATGCTCGGACGCAAATCTGATAGACATTCCAGTTGAAGTAGAGACGCCTGATCGTCACTATTATCATCTTGCCCTCTTCACAAACAGAAATGTGAATGCATACGAGGAATTGACATGGGACTATGGTATTGACTTCGATGATCATGAGCATCCCATTAAAGCATTTAAGTGTTGTTGTGGAAGTGCCTTCTGCCGTGATAAGAAACAAAAAGTTACCACCTATTTGCTGAAAGTCAGCAATAAATGTTTTCAAGCATCTTAA	2136	0.404	MTITFGSIMAPPNPRVIKAYNAMRPLGISDEEVKPVLKNLLELYDRNWELIEEDNYRTLIDAYFELKEDKQAEGKRKAPISYLDGKRPKQKLHLVDGDDQVSSTDNSRQGLPVEDTEIPPSAFKQEIIKPSQTSIGHMEPTTSSQALQTMSSAVERISTLPCMAARDRKLHRDKASAAGHCEDPIDEPSNPRIQRKNISSDHHQKELMTPRTEKLKLHLGPVSTSYNGSSDSSNGNRRVKSLSALYQNVHKKDGSSACNNNNRIQKGNIDIASSPMGEIKISLNCNAALRQPNFRIPDLDAVMKSMEEKYLKAYKIVEPQSSMVKLLDDLCASYLKLGFNLNRKGSTPEYTNSRNVACLPPQGVTEDDKNSFHFLDDITKGSENVKISLLDDTGSEELPKFNYIPYNVIYQDANVNISLARIADEGCCADCAGDCLSLSLPCACSQETGGEFAYTPQGLLKEDFLKACMSMKLEPQEHHFVYCQECPLERSKNDIMPEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGLRCKLQVFVTGEGKGWGVRTLEDLPKGCFVCEYAGEILTNTELYERIMQNSGNDRHTYPVTLDADWGSEGVLKDEEALCLDATYNGNVARFINHRCSDANLIDIPVEVETPDRHYYHLALFTNRNVNAYEELTWDYGIDFDDHEHPIKAFKCCCGSAFCRDKKQKVTTYLLKVSNKCFQAS	711

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g01843	711	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	9	696	-	-
	Pumo3g01843	711	MobiDBLite	consensus disorder prediction	97	116	-	-
	Pumo3g01843	711	SMART	set_7	533	673	IPR001214	GO:0005515
	Pumo3g01843	711	MobiDBLite	consensus disorder prediction	176	209	-	-
	Pumo3g01843	711	ProSiteProfiles	SET domain profile.	533	667	IPR001214	GO:0005515
	Pumo3g01843	711	Gene3D	-	5	69	IPR043017	-
	Pumo3g01843	711	SMART	preset_2	375	517	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Pumo3g01843	711	FunFam	SET-domain containing protein lysine methyltransferase family protein	378	692	-	-
	Pumo3g01843	711	Pfam	Pre-SET motif	378	525	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Pumo3g01843	711	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	705	IPR025776	-
	Pumo3g01843	711	SUPERFAMILY	SET domain	385	690	IPR046341	-
	Pumo3g01843	711	Pfam	Ubiquitin-binding WIYLD domain	15	68	IPR018848	-
	Pumo3g01843	711	CDD	SET_SETDB-like	399	667	-	-
	Pumo3g01843	711	Pfam	SET domain	545	667	IPR001214	GO:0005515
	Pumo3g01843	711	ProSiteProfiles	Pre-SET domain profile.	427	530	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Pumo3g01843	711	Gene3D	SET domain	362	678	IPR046341	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g01843	Pumo-Chr3	29429531	29436172	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g01843	509	690	C2H2 Transcription Factor Family	AT2G23740	41.711	2.14e-31	130

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Pumo3g01843		Pre-SET	2.2e-17	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g01843	-		-	gsj:114402909	1257.66