Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01838 ATGAAATATGGTAAGAACCAGTGGGCTCGAATCTCTTCGCTCCTTGTTCGCAAATCTGCCAAGCAATGCAAAGCTCGCTGGTACGAGTGGCTTGATCCTTCCATAAAAAAGACTGAGTGGACGAGAGAAGAGGATGAGAAGCTACTTCATCTTGCTAAGCTTATGCCCACGCAGTGGAGAACAATTGCTCCAATTGTTGGCCGTACCCCGTCCCAGTGTCTTGAGCGGTATGAGAAGCTCCTTGATGCAGCCTGTGTGAAGGATGAGAACTATGAGCCCGGTGATGATCCTCGGAAATTGCGTCCTGGGGAGATTGATCCAAACCCCGAGTCAAAACCTGCACGCCCAGATCCTGTTGATATGGACGAAGATGAAAAGGAGATGCTTTCTGAAGCACGAGCCCGGTTAGCCAACACAAAGGGCAAGAAAGCAAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCCAGGAGACTTGCTTCTTTACAAAAGAAGAGAGAATTGAAGGCAGGCTGGAATTGA 522 0.4866 MKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAGWN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01838 173 Coils Coil 145 165 - -
Pumo3g01838 173 MobiDBLite consensus disorder prediction 88 138 - -
Pumo3g01838 173 MobiDBLite consensus disorder prediction 148 173 - -
Pumo3g01838 173 CDD SANT 2 31 IPR001005 -
Pumo3g01838 173 Pfam Myb-like DNA-binding domain 2 31 IPR001005 -
Pumo3g01838 173 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 170 IPR047242 GO:0000398|GO:0000974
Pumo3g01838 173 ProSiteProfiles Myb-like domain profile. 1 31 IPR001005 -
Pumo3g01838 173 SMART sant 1 33 IPR001005 -
Pumo3g01838 173 SMART sant 36 83 IPR001005 -
Pumo3g01838 173 FunFam CDC5 cell division cycle 5-like 37 98 - -
Pumo3g01838 173 SUPERFAMILY Homeodomain-like 11 84 IPR009057 -
Pumo3g01838 173 Pfam Myb-like DNA-binding domain 40 91 - -
Pumo3g01838 173 CDD SANT_CDC5_II 33 84 IPR047240 -
Pumo3g01838 173 MobiDBLite consensus disorder prediction 88 173 - -
Pumo3g01838 173 Gene3D - 1 36 - -
Pumo3g01838 173 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 31 IPR017930 -
Pumo3g01838 173 Gene3D - 37 93 - -
Pumo3g01838 173 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 85 IPR017930 -
Pumo3g01838 173 ProSiteProfiles Myb-like domain profile. 32 81 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01838 Pumo-Chr3 29382408 29383252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01838 1 171 MYB-Related Transcription Factor Family AT1G09770 94.737 2.55e-105 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo3g01838 Myb_DNA-bind_6 4.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01838 K12860 - gmx:100801352 328.176