Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01833 ATGACGACACCACCGTCTTCCTCCTCAGCTTCGCAATCGCAATTCGCCTATTCAAACCCTTCCTCCTACTTCCCCGTTCCCTTTCACCTTCAGCAACCCGCAACCACTCACTACGCTGCGCCCTACGTCGCCGCTCCGTCTGCGCAAATCCCCGCTCCTCCCGTCGTCGGCCCCGTTGCGCCCGCTCCGGTGCCCGCCGTATACTCCGCCGTGCCGCAATATCAGGCACAGCAGTTATTTGAGAGGGATGCACAGATAATAACGCCGGAGGCTCTCGAGAATGTTAAGGCAGCGATTGCGAGCAGCGACGTGGAGCACAAAACCGATGCCAAAAAGAAAGCGGTTCCTCGCAAAGCTGCTGGCCATTCTTGGGAGGATCCTATCCTTGCAGAGTGGCCAGAAGATGATTATCGGCTCTTCTGTGGTGATCTTGGTAATGAGGTGAATGATGATGTTCTCTCAAAAGCATTTTCACGATTTCCTTCCTTTAACTTGGCACGAGTTGTCAGAGACAAGCGGACTGGTAAAACAAAAGGTTATGGATTTGTGAGCTTTGCCAATCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAGTATGTTGGAAATCGTCCGATAAAACTACGCAAGAGTAAGTGGAAGGAGAGGACAGATTATGAAGCACTGGAGAAACAGAAGAATCACATTCAAAAGAAACCGAAAATGCCAAGGAAAGGTGTGCTGCACAAGTGA 738 0.5054 MTTPPSSSSASQSQFAYSNPSSYFPVPFHLQQPATTHYAAPYVAAPSAQIPAPPVVGPVAPAPVPAVYSAVPQYQAQQLFERDAQIITPEALENVKAAIASSDVEHKTDAKKKAVPRKAAGHSWEDPILAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNLARVVRDKRTGKTKGYGFVSFANPSDLAAALKEMNGKYVGNRPIKLRKSKWKERTDYEALEKQKNHIQKKPKMPRKGVLHK 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01833 245 FunFam RNA-binding protein 42 72 222 - -
Pumo3g01833 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 209 IPR000504 GO:0003723
Pumo3g01833 245 SUPERFAMILY RNA-binding domain, RBD 120 217 IPR035979 GO:0003676
Pumo3g01833 245 SMART rrm1_1 138 211 IPR000504 GO:0003723
Pumo3g01833 245 Gene3D - 85 229 IPR012677 -
Pumo3g01833 245 Coils Coil 244 245 - -
Pumo3g01833 245 MobiDBLite consensus disorder prediction 219 245 - -
Pumo3g01833 245 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 64 223 - -
Pumo3g01833 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Pumo3g01833 245 CDD RRM_RBM42 131 213 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01833 Pumo-Chr3 29332820 29336165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01833 139 226 Eukaryotic Initiation Factors Gene Family AT1G71770 28.409 2.21e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01833 K25079 - gmx:100800281 435.647