Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01825 ATGAAACTGGTGCCTCCCAAAAACTGTTTCTTGACTCCTGAGCCGCCGATACCACCTCGCTACGAAGAGAAACAAATTATTAGGGTTTCGTACAGAGGGGTCCGAAAGCGGGCATGTGGCAACTACGCGGCGGAGATAAGGGACTCTACGAGAAATGGGGCGAGGGTTTGGTTGGGAACCTTCGACACTGCCGAGGATGCTGCTTTGGCTTACGACCAAGCAGCATTAACAACGCGTGGCCACAACGCTGTTCTCAACTTCCCACGGCAACTCGTTCTGCAATCGCTTCACGAGATGAAGTTTAGGTTCCAGAGAGGGTACTCTCCCGCTTTGGAACTAAAGAAGCGCAACTTCATCAAGAGGAAGTCCGACAGAAAGAACCGCCAACGGGTTGGGACAGAAAATAATGTTGTCGTATTCGAGGATTTGGGAGCAGATTATTTGGAACAACTTCTCACGCTGTACCAACATTAA 474 0.5 MKLVPPKNCFLTPEPPIPPRYEEKQIIRVSYRGVRKRACGNYAAEIRDSTRNGARVWLGTFDTAEDAALAYDQAALTTRGHNAVLNFPRQLVLQSLHEMKFRFQRGYSPALELKKRNFIKRKSDRKNRQRVGTENNVVVFEDLGADYLEQLLTLYQH 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01825 157 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Pumo3g01825 157 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Pumo3g01825 157 ProSiteProfiles AP2/ERF domain profile. 30 88 IPR001471 GO:0003700|GO:0006355
Pumo3g01825 157 Pfam AP2 domain 30 81 IPR001471 GO:0003700|GO:0006355
Pumo3g01825 157 Gene3D AP2/ERF domain 30 90 IPR036955 GO:0003700|GO:0006355
Pumo3g01825 157 CDD AP2 31 88 IPR001471 GO:0003700|GO:0006355
Pumo3g01825 157 PANTHER DNA-BINDING DOMAIN 25 152 IPR044808 GO:0003700|GO:0009873
Pumo3g01825 157 SMART rav1_2 30 94 IPR001471 GO:0003700|GO:0006355
Pumo3g01825 157 FunFam Ethylene-responsive transcription factor 2 29 89 - -
Pumo3g01825 157 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01825 Pumo-Chr3 29271610 29272083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01825 13 152 AP2-EREBP Transcription Factor Family AT3G23240 50.685 3.75e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo3g01825 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01825 K14516 - vvi:104877303 160.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01825 3 29271610 29272083 Pumo3g01825 3 29271610 29272083 ECH