Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01820 ATGGCGAACCGGTGGTGGACCGGGTCTGTGGGTCTGGAGAACTCTGGCGACTCGATGAAAAAACCGGATCTGGGGTTTTCCATGAATGAGAGTGCGGTGACGGGGGGCCATATGGGAGAAGAAGAAGAGGAGAAAGAGAACAGCGACGAGCCCAGAGAGGGAGCTATCGACGTGGCCACCACGCGCCGCCCTAGGGGGCGTCCACCGGGCTCCAAAAACAAGCCCAAGCCGCCGATATTCGTCACCCGAGACAGCCCTAACGCGCTGCGAAGCCACGTCATGGAGATAGCCGGCGGAGCCGACATCGCCGACTGCGTGGCGCAGTTCGCTCGGAGGAGCCAGCGAGGTGTCTCCATTCTCAGCGGCAGCGGCACCGTCGTCAACGTCACTCTCCGCCAGCCCACGGCGCCCGGCGCCGTCATGGCGCTCCATGGCCGCTTCGACATCCTCTCCCTCACCGGCTCCTTTCTCCCCGGACCCTCCCCGCCCGGCGCCACCGGCCTCACCATCTACCTCGCCGGAGGCCAGGGACAGATCGTCGGCGGAGGGGTGGTGGGCCCACTCGTGGCGGCGGGGCCCGTTTTGATAATGGCGGCGACGTTTTCCAATGCAACGTACGAGAGATTGCCCTTGGAGGATGACGATCAGGAGCACGGCGGCGGAGGAGGCTCTCCTCCGGGAATTACCTGCGGCCCCGGCGAGGCATCGTCGTCGATTTCGGTGTATAACAATAATAATGTTCCTCCGAATTTAGGTCTTCCGAATGGGCAACATCTGAATCATGAAGCGTATTCTTCTCCTTGGGGTCATGCTCCTCATGCCAGACCTCCTTTCTAA 837 0.6213 MANRWWTGSVGLENSGDSMKKPDLGFSMNESAVTGGHMGEEEEEKENSDEPREGAIDVATTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEIAGGADIADCVAQFARRSQRGVSILSGSGTVVNVTLRQPTAPGAVMALHGRFDILSLTGSFLPGPSPPGATGLTIYLAGGQGQIVGGGVVGPLVAAGPVLIMAATFSNATYERLPLEDDDQEHGGGGGSPPGITCGPGEASSSISVYNNNNVPPNLGLPNGQHLNHEAYSSPWGHAPHARPPF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01820 278 MobiDBLite consensus disorder prediction 212 243 - -
Pumo3g01820 278 ProSiteProfiles PPC domain profile profile. 86 226 IPR005175 -
Pumo3g01820 278 MobiDBLite consensus disorder prediction 1 86 - -
Pumo3g01820 278 Gene3D - 89 217 - -
Pumo3g01820 278 Pfam Plants and Prokaryotes Conserved (PCC) domain 90 203 IPR005175 -
Pumo3g01820 278 SUPERFAMILY AF0104/ALDC/Ptd012-like 86 214 - -
Pumo3g01820 278 FunFam AT-hook motif nuclear-localized protein 89 216 - -
Pumo3g01820 278 PIRSF ESCAROLA 12 278 IPR014476 GO:0003680
Pumo3g01820 278 CDD DUF296 90 173 IPR005175 -
Pumo3g01820 278 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 33 269 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01820 Pumo-Chr3 29212303 29213821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01820 1 278 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 53.896 2.79e-86 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01820 - - gmx:100797639 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01820 3 29212303 29213821 Pumo3g01820 3 29212303 29213821 ECH