Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01818 ATGCCGTTGCTTCATGTATCAAATTTCAAAGGAGGGACGCCGGAGTTGGTTGAGACATGTTATGCTATACTGGTTTTGGTTCTGCCAAGCTCAAGCACTAGGGTTTGGGCCTACCATGAGATGGAGATAGTTGAAGTGGTTGCTGATCAGGTGGCTGTTGCCCTGTCTCATGCGTCTGTTCTTGAAGAGTCTCAGCTGATGAGACAGAAGCTGGAAGAGCGTAACCGAGCGTTGCAACAGGCTAAAAAGAATGCAATGATGGCCAGCCAGGCAAGGAAGTCGTTTCAGAAGGTGATGAGCCATGGAATGCGGAGGCCTATGCATTCTATTCTGGGGATGCTTTCATTGTTTCAAGAGGATAATTTGAGGTCTGAGCAGAAGATTATTGGTGATACAATGTTGAAAGTTGGCCATGTGCTCTCAAGTTTGATTAATGATGTAATGGAGATTTCAGAAAATGAAAAGGGAGGCTTCCGGTTAGAGATGAAACCTTTCCTTTTGCATTCAATGATGAGGGAAGCTGCTTGCATTGCCAAGTGCTTGTGTGCTTATGAAGGCTTTGGTTTTGAAATTGATGTCCTGAAGTCTTTGCCTGAAACAGTTATGGGTGATGAAGCAAGGACTTTCCAAGTAATTTTACACATGATTGGCTATTTATTGAACATGAATAACAAAGGGACTCTCAATTTTCAAGTTTTTCTTGAAAGTGATGGTGGAGATAAGGATGATAAAAATATTGGAATATGGAGATCAAGCAGTCAAAATGAGTATGTACATATAAAATTTGATTTTCAGATTACTCATAGTTCTCAGTCAGATGAAGCAATTTCAACAGTACATTATACTGGTAGGAGGCAGTACTACAACAATGAACCTAAGGATGGCCTGAGCTTCCGCATGTGCAAAAAGTTGGTACAGATGATGCAAGGTAATATATGGATATCACCGAACTCCCTGGGTTTGGTGCAAGGCATGACACTTCTTCTCAGGTTTCAGATAGGACCATCACTTGACAAATCCATATTTGCTCCTAAAGATTATTCAAACTCACAGTTCAGAGGCCTTAAGGTTGTGTTGGCCGAGGATGATGGTGTAAACAGGACAGTGACCAAGAAGCTACTTGAAAAGCTTGGATGTCAAGTAACTGCTGTTTCATCAGGGTTTGAGTGCCTGAGTGCTGTAAGTGGTGCTGGTAACTCATTCAGAATTATCCTGTTGGATCTTCACATGCCCGAAATGGATGGCTTTGAAGTGGCAAAGAGGATCAGGAAGTTCCATAGCCGTAGTTGGCCCTTGATTATAGCTCTTATAGCAAGTGCAGAAGAACATGTGAGGGAGAAATGCCTACTTGCGGGAATGAATGGATTGATCCAAAAACCTATCGTACTTCATCAAATAGCAGATGAACTTAGAACAGTCCTACAAAGAGCAGGTGAAAAACTGTAA 1446 0.4205 MPLLHVSNFKGGTPELVETCYAILVLVLPSSSTRVWAYHEMEIVEVVADQVAVALSHASVLEESQLMRQKLEERNRALQQAKKNAMMASQARKSFQKVMSHGMRRPMHSILGMLSLFQEDNLRSEQKIIGDTMLKVGHVLSSLINDVMEISENEKGGFRLEMKPFLLHSMMREAACIAKCLCAYEGFGFEIDVLKSLPETVMGDEARTFQVILHMIGYLLNMNNKGTLNFQVFLESDGGDKDDKNIGIWRSSSQNEYVHIKFDFQITHSSQSDEAISTVHYTGRRQYYNNEPKDGLSFRMCKKLVQMMQGNIWISPNSLGLVQGMTLLLRFQIGPSLDKSIFAPKDYSNSQFRGLKVVLAEDDGVNRTVTKKLLEKLGCQVTAVSSGFECLSAVSGAGNSFRIILLDLHMPEMDGFEVAKRIRKFHSRSWPLIIALIASAEEHVREKCLLAGMNGLIQKPIVLHQIADELRTVLQRAGEKL 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01818 481 Coils Coil 61 91 - -
Pumo3g01818 481 ProSiteProfiles Response regulatory domain profile. 356 474 IPR001789 GO:0000160
Pumo3g01818 481 CDD REC_ETR-like 355 470 - -
Pumo3g01818 481 CDD HATPase_ETR2_ERS2-EIN4-like 197 329 - -
Pumo3g01818 481 Pfam Response regulator receiver domain 357 469 IPR001789 GO:0000160
Pumo3g01818 481 SUPERFAMILY CheY-like 351 476 IPR011006 -
Pumo3g01818 481 SUPERFAMILY GAF domain-like 25 58 - -
Pumo3g01818 481 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 76 156 IPR036097 GO:0000155|GO:0007165
Pumo3g01818 481 FunFam Ethylene receptor 4 58 152 - -
Pumo3g01818 481 Gene3D - 355 480 - -
Pumo3g01818 481 Pfam His Kinase A (phospho-acceptor) domain 93 155 IPR003661 GO:0000155|GO:0007165
Pumo3g01818 481 Gene3D - 54 154 - -
Pumo3g01818 481 ProSiteProfiles Histidine kinase domain profile. 98 335 IPR005467 -
Pumo3g01818 481 SMART REC_2 355 470 IPR001789 GO:0000160
Pumo3g01818 481 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 1 478 - -
Pumo3g01818 481 FunFam Ethylene receptor 353 477 - -
Pumo3g01818 481 CDD HisKA 89 151 IPR003661 GO:0000155|GO:0007165
Pumo3g01818 481 SMART HisKA_10 91 156 IPR003661 GO:0000155|GO:0007165
Pumo3g01818 481 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 160 317 IPR036890 -
Pumo3g01818 481 Gene3D - 155 334 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01818 Pumo-Chr3 29186366 29189301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01818 1 479 Miscellaneous Gene Families AT3G04580 58.367 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo3g01818 Response_reg 1.1e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01818 K14509 - gmx:100101892 905.975