LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g01805	ATGGCCACCGAGGAGCAAGTATTTGCACTGAAAGACAAGTTGCGGGATTTGGTTAAGAGTATTGTGGAGAGCGATGACTACACCGTACACGCCGCAGATGCGGCCATGGATGCTCTTTCTGCTCTCAAGGATTTGAAATGCACTGCTTCTCTCTCATGCAAGTTGGACAATATAACTGTTCCTCCACACTTTCGATGCCCCCTCTCTGGACACTTGATGACAGATCCTGTTATCTTGGCCACTGGACAGACTTTTGATCGGCCATTCATTCAGAGGTGGCTGAACGAGGTCCACAGAATATGCCCTCAGACTCAGCAAGTCCTCTCTCACTTTATCCTCACCCCCAATTGCTTGCTCCAAAACATGATTTCACAGTGGTGCAAAGAGCATGGAGTTGAGCTACCAAAGCCAGTTTGGGACATTCACGATGAACAAGTAACTGACGCACACAGACACCGTTTGCGTTCATTGCTCTACAAGCTGTCACTCTCTGTCTCCGAACAAAAAGAAGCTGCAAAAGAGCTTCGGCAGTTAACAAAGCGAATGCCAGCGTTTCGAACACTCTTTGGTGACTCAGAATTGATTCATCTATTGCTGAGTCCGTTGTCACCCGGCATTGCTTGCGTGGACCCCGAGCTCCACGAGGACTTGATCACAACTCTTCTGAATCTCTCAATTCACGATGACAACAAGAGAGTGTTTGCAGAGGACGAAAACGTCATTTCACTTCTCATTGAATCGTTGAAATCAGGAACGGTTCAAACGAGAAGCAATGCAGCAGCGGCCATTTTCTCAATGTCAGCGCTTGATTCAAACAAACACATAATTGGAGAATCCGGAGCTATAAAATACTTGGTGGATTTACTAGAGGAGGGGCACCCATCAGCTATGAAAGATGCTGCTTCAGCATTGTTCAAACTGTGCTATTCGCATGAAAATAAAGGGAGAACTGTGCGAGAAGGTGCAGTGCAGGTTATTCTCAGCAAGATCGTTGATCATGTTCTGGTTGACGAGCTGTTGTCGCTGCTGGCACTTCTCTCTACACATCCCAAGGCTGTTGAAGCATTGGTGAACCATGGTGCTGTTCCCTTCTTGTTGGAGATTTTAAGGGAAAGCACGTCAGAACGAGTCAAGGAAAACTGTGTTGCGATTCTGTATATAATCTGTTTCAATGATAGAGGAAAAAGGAGGGAAATTAGAGAGGATGAAATGGCCAATGGCACACTGTCTAAGCTTGCACAATGCGGGAATTCAAGGGCCAAAAGGAAAGCTAACGCTATTCTTGACAGGCTCGGCATAGCTTAA	1305	0.4636	MATEEQVFALKDKLRDLVKSIVESDDYTVHAADAAMDALSALKDLKCTASLSCKLDNITVPPHFRCPLSGHLMTDPVILATGQTFDRPFIQRWLNEVHRICPQTQQVLSHFILTPNCLLQNMISQWCKEHGVELPKPVWDIHDEQVTDAHRHRLRSLLYKLSLSVSEQKEAAKELRQLTKRMPAFRTLFGDSELIHLLLSPLSPGIACVDPELHEDLITTLLNLSIHDDNKRVFAEDENVISLLIESLKSGTVQTRSNAAAAIFSMSALDSNKHIIGESGAIKYLVDLLEEGHPSAMKDAASALFKLCYSHENKGRTVREGAVQVILSKIVDHVLVDELLSLLALLSTHPKAVEALVNHGAVPFLLEILRESTSERVKENCVAILYIICFNDRGKRREIREDEMANGTLSKLAQCGNSRAKRKANAILDRLGIA	434

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g01805	434	Gene3D	-	156	432	IPR011989	-
	Pumo3g01805	434	SUPERFAMILY	RING/U-box	55	137	-	-
	Pumo3g01805	434	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	57	133	IPR013083	-
	Pumo3g01805	434	CDD	RING-Ubox_PUB	61	113	IPR045210	-
	Pumo3g01805	434	SMART	arm_5	310	348	IPR000225	GO:0005515
	Pumo3g01805	434	SMART	arm_5	269	309	IPR000225	GO:0005515
	Pumo3g01805	434	SMART	arm_5	349	390	IPR000225	GO:0005515
	Pumo3g01805	434	SMART	arm_5	227	268	IPR000225	GO:0005515
	Pumo3g01805	434	ProSiteProfiles	U-box domain profile.	59	133	IPR003613	GO:0004842\|GO:0016567
	Pumo3g01805	434	SUPERFAMILY	ARM repeat	164	431	IPR016024	-
	Pumo3g01805	434	SMART	Ubox_2	63	126	IPR003613	GO:0004842\|GO:0016567
	Pumo3g01805	434	PANTHER	U BOX DOMAIN-CONTAINING	15	430	-	-
	Pumo3g01805	434	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	280	322	IPR000225	GO:0005515
	Pumo3g01805	434	FunFam	RING-type E3 ubiquitin transferase	144	434	-	-
	Pumo3g01805	434	Pfam	Armadillo/beta-catenin-like repeat	350	389	IPR000225	GO:0005515
	Pumo3g01805	434	Pfam	U-box domain	60	130	IPR003613	GO:0004842\|GO:0016567

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g01805	Pumo-Chr3	29046881	29048895	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g01805	122	431	U-box Gene Family	AT3G07360	55.380	3.20e-106	315

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g01805	-		-	gmx:100806132	652.129