Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01788 ATGTTTAAATTCTTGAAAGAGGTGGTGAGTGGATCTGGCACCGGCCTCAAGGATCTCCCATACAATATCGGTGAACCTTACCCTTCTGCTTGGGGCTCTTGGCTTCATTTTCGCGGCACCTCCAAGGATGATGGTTCTCCGGTGTCTATATTTTCTCTGTCTGGGAGCAATGCTCAGGATGGACATTTAGCTGCGGGGCGTAATGGCGTTAAGCGTCTTCGCACTGTTAGGCATCCGAATATTTTGTCCTTTCTTCACAGCACTGAGATCGAAACCGTTGACGCTGGTTCTCCCAAGGTTACAATTTATATGGTGACCGAGCCTGTGATGCCGCTGTCAGACAAGATTAAGGAGTTGGGTCTTGAAGGTACACAAAGGGATGAATATTATGCTTGGGGCCTGCATCAAATAGCAAAAGCTATGAGCTTCTTAAATAACGACTGTAAACTTGTTCATGGTAATGTCTGCTTGGCTAGTGTTGTTGTCACACAAACTTTGGACTGGAAACTCCATGCTTTTGATGTTCTATCTGAGTTTGATGGGAGTAATGAAACTTCCTCTGGGCAAATGCTGCAATATGCATGGCTTGTTGGATCACAATACAAACCAATGGAACTGGCAAAATCTGACTGGGCTGCAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGGTTGTCTAATCTATGAGCTATTCTCTGGTATCAAGTTGGGCAAAACAGAGGAGTTACGTAACACTGTCTCCATTCCCAAGTTTCTGCTTCCAGATTACCAGCGGCTACTGAGTTCTGTGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGAGTATTTTCAAAATAAGTTGGTAGACACAATACATTTCATGGAAATTCTTAGTTTGAAAGATAGTGTTGAGAAAGACACCTTCTTCCGCAAGCTTCCAAATTTGGCAGAGCAGCTTCCTCAGCAGATTGTGTTGAAAAAGTTACTTCCTTTATTAGCTTCTGCACTTGAATTTGGTTCAGCTTCTGCCCCTGCTTTGACTGCATTGTTGAAAATGGGTTCCGGGCTTTCAGCTGAGGAGTTCCGTGTCAAGGTGATTCCAACAATTATTAAACTTTTTGCATCCAATGACCGAGCTATTCGAGTTGGCCTTCTTCAACATATTGATCAGTTTGGGGAGTCATTATCAGCACAGGTTGTTGACGAGCAGGTTTACCCTCATGTTGCTACTGGGTTCTCTGATACATCTGCATTTCTGAGGGAACTTACTCTCAAGTCCATGCTAATTCTGGCTCCAAAGCTGTCTCAAAGGACCATTTCAGGGTCATTATTAAAGCATATGTCAAGGTTACAGGTTGATGAAGAACCAGCTATACGAACAAATACTACCATCTTATTGGGAAATATTGCAAGCCACTTAAATGAAGGGACAAGAAGAAGAGTGTTGATTAATGCATTTACAGTCCGTGCTTTACGTGATACTTTTCCACCTGGTAGAGGAGCAGGCATTATGGCTTTATGTGCAACCAGTTCCTACTATGACATCACAGAAATTGCAACTCGGATTCTTCCTAATGTTGTTGTACTCACAATTGATCCTGACAGTGATGTGCGATCTAAGGCATTTCAAGCTGTTGATCAATTTTTGCAGATGGCGAAGCAATATTATGAAAAGACAAATACAGCAGAGGCTACTGAGGGTACAGGCATGGGAATCTCTTCAATTCCAGGAAATGCTGGTTTACTTGGATGGGCCATGAGCTCCTTGACTCTGAAGGGTAAACCTTCTGATCATGCTCCAGTTGCTTCCGTCAGTTCTAGCGCACTCATGACAACATCTTCTAATGCCAGCTCAGCTGTAGATACTCCTTCAACAGCACCTGTTCGTGTAAGCTCCACACCAGATTTTGCTGAACACCCTGTCCCTACATCCCCAACATCAACGGATGGGTGGGGGGAACTAGAGAATGGACTCGACGAGGAGCGTGAAAATGACAAGGATGGGTGGGATGATCTGGAACCACTTGAAGAAATAAAACCAACTCCAGCTCTTGCAAACATTCAAGCAGCTCAAAGGCGGCCAGTTTCTCAACCTGTTTCGCAGACAAAGCAAGCCTCAAGTTTGCGATCTAAAAGTACACCAAAGTTGAACAAGGATGAAGATGATGATATGTGGGGTTCCATAGCAGCTCCTGCTCCAAAAACATCGAAGACTTTAAATTTGAAACCAACTGTAACTGATGATGATGATCCTTGGGCTGCCATTGCTGCTCCTGCACCCACTACTAAGGCCAAGCCCTTATCATCTGGCAGAGGACGGGGTGCTAAACCTGCTGCTCCAAAGTTAGGTGCTCAGCGGATAAACCGGACAACATCATCTGGGATGTAA 2391 0.4429 MFKFLKEVVSGSGTGLKDLPYNIGEPYPSAWGSWLHFRGTSKDDGSPVSIFSLSGSNAQDGHLAAGRNGVKRLRTVRHPNILSFLHSTEIETVDAGSPKVTIYMVTEPVMPLSDKIKELGLEGTQRDEYYAWGLHQIAKAMSFLNNDCKLVHGNVCLASVVVTQTLDWKLHAFDVLSEFDGSNETSSGQMLQYAWLVGSQYKPMELAKSDWAAIKKSPPWAIDSWGMGCLIYELFSGIKLGKTEELRNTVSIPKFLLPDYQRLLSSVPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPQQIVLKKLLPLLASALEFGSASAPALTALLKMGSGLSAEEFRVKVIPTIIKLFASNDRAIRVGLLQHIDQFGESLSAQVVDEQVYPHVATGFSDTSAFLRELTLKSMLILAPKLSQRTISGSLLKHMSRLQVDEEPAIRTNTTILLGNIASHLNEGTRRRVLINAFTVRALRDTFPPGRGAGIMALCATSSYYDITEIATRILPNVVVLTIDPDSDVRSKAFQAVDQFLQMAKQYYEKTNTAEATEGTGMGISSIPGNAGLLGWAMSSLTLKGKPSDHAPVASVSSSALMTTSSNASSAVDTPSTAPVRVSSTPDFAEHPVPTSPTSTDGWGELENGLDEERENDKDGWDDLEPLEEIKPTPALANIQAAQRRPVSQPVSQTKQASSLRSKSTPKLNKDEDDDMWGSIAAPAPKTSKTLNLKPTVTDDDDPWAAIAAPAPTTKAKPLSSGRGRGAKPAAPKLGAQRINRTTSSGM 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01788 796 SUPERFAMILY Protein kinase-like (PK-like) 37 287 IPR011009 -
Pumo3g01788 796 ProSiteProfiles Protein kinase domain profile. 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01788 796 Gene3D - 282 561 IPR011989 -
Pumo3g01788 796 Gene3D Transferase(Phosphotransferase) domain 1 109 266 - -
Pumo3g01788 796 MobiDBLite consensus disorder prediction 691 713 - -
Pumo3g01788 796 MobiDBLite consensus disorder prediction 689 796 - -
Pumo3g01788 796 SMART serkin_6 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01788 796 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 9 774 - -
Pumo3g01788 796 SUPERFAMILY ARM repeat 293 551 IPR016024 -
Pumo3g01788 796 ProSiteProfiles HEAT repeat profile. 366 404 IPR021133 -
Pumo3g01788 796 MobiDBLite consensus disorder prediction 615 674 - -
Pumo3g01788 796 MobiDBLite consensus disorder prediction 656 674 - -
Pumo3g01788 796 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Pumo3g01788 796 MobiDBLite consensus disorder prediction 615 652 - -
Pumo3g01788 796 Pfam Protein tyrosine and serine/threonine kinase 60 237 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01788 Pumo-Chr3 28883784 28894624 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Pumo3g01788 PK_Tyr_Ser-Thr 1.3e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01788 K08876 - gmx:100792884 1416.75