Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01783 ATGTCAATGGAGAACAAGCTCAACCTCATCGTCCCTAATCCTCAAGATTCACTGTGGATGATGAATTTGAGGACTGGTGAAACAATGGATTCTGGACCGTATCCGGAGCGTCCAGGGGAGCCAGATTGTTCATATTACATCAGAACTGGACTTTGTAGATTTGGTGCAACGTGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCCACTGCAAGGTTGATAGGCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGCCAGTACTATCTGAAGACAGGAACTTGCAAATTTGGAGCCACATGCAAATTTCATCATCCTAAAGACCAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTCCGCCCTAATGAGCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGATGCTCTCATTACGGGGTTCTCCTGTTTACCCTACCGTCCATTCTCCAACTACCCCAGGTCAGCAGTCATATGCTGGAGGAATTACAAATTGGTCAAGTGCATCATACATTCCTAGTCCTCGCTGGCAAGGTCCTTCAAGTTATGCACCCTTAATTCTACCTCAGGGAGTGGTTTCAGTGCCTGGGTGGAGTGCATACAGTGGTCAAATGGGATCAATCTCTACTTCAGACAGTCCACAGCAAGCAATGAGAAATGGTCAAACATATGGAACTTCTCGTCAAGGTGAGCTAGCAAATGCAGGATCACAAGGGGCATATTCTCAATTCCGTTCTGGCACTGTTCCGGTAGGGTTTTATGCATTGCAGAGGGAGAACATATTTCCTGAGAGACCTGGTCAGCCCGAATGCCAATTCTACATGAAGACAGGAGATTGTAAGTTTGGTGCAGTCTGTCGGTTCCACCACCCGCGAGAGAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATAGGCCTTCCTTTACGTCCTGGAGAACCTTTGTGTGTCTTCTATTCTCGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGGAATTATCGCTTATAATATCTCATCGCCTTCAGCTGATACCCCAAGCAGGCATTTGTTAGGATCTTCATCAGGAACTGCTGCGTTAAATTTATCTTCCGAAGGACTTGTTGAGTCAAGCTCAGCAAATCCCAGGCGGCTTTCACTATCAGAGACAAGACAAATTCCTTCTGGTGATGATGACATTGATGATGATGGATGA 1287 0.4561 MSMENKLNLIVPNPQDSLWMMNLRTGETMDSGPYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARLIGEFPERIGQPECQYYLKTGTCKFGATCKFHHPKDQAGIAGRVALNILGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLRGSPVYPTVHSPTTPGQQSYAGGITNWSSASYIPSPRWQGPSSYAPLILPQGVVSVPGWSAYSGQMGSISTSDSPQQAMRNGQTYGTSRQGELANAGSQGAYSQFRSGTVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIIAYNISSPSADTPSRHLLGSSSGTAALNLSSEGLVESSSANPRRLSLSETRQIPSGDDDIDDDG 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01783 428 Gene3D - 114 163 - -
Pumo3g01783 428 SUPERFAMILY CCCH zinc finger 42 65 IPR036855 GO:0046872
Pumo3g01783 428 ProSiteProfiles Zinc finger C3H1-type profile. 37 65 IPR000571 GO:0046872
Pumo3g01783 428 SUPERFAMILY CCCH zinc finger 86 111 IPR036855 GO:0046872
Pumo3g01783 428 ProSiteProfiles Zinc finger C3H1-type profile. 335 363 IPR000571 GO:0046872
Pumo3g01783 428 MobiDBLite consensus disorder prediction 396 417 - -
Pumo3g01783 428 SMART c3hfinal6 82 109 IPR000571 GO:0046872
Pumo3g01783 428 SMART c3hfinal6 128 155 IPR000571 GO:0046872
Pumo3g01783 428 SMART c3hfinal6 37 64 IPR000571 GO:0046872
Pumo3g01783 428 SMART c3hfinal6 335 362 IPR000571 GO:0046872
Pumo3g01783 428 SMART c3hfinal6 289 316 IPR000571 GO:0046872
Pumo3g01783 428 ProSiteProfiles Zinc finger C3H1-type profile. 82 110 IPR000571 GO:0046872
Pumo3g01783 428 FunFam Zinc finger nuclease 2 36 113 - -
Pumo3g01783 428 ProSiteProfiles Zinc finger C3H1-type profile. 289 317 IPR000571 GO:0046872
Pumo3g01783 428 PANTHER PROTEIN PHOSPHATASE RELATED 27 382 - -
Pumo3g01783 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 131 155 IPR000571 GO:0046872
Pumo3g01783 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 291 316 IPR000571 GO:0046872
Pumo3g01783 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 109 IPR000571 GO:0046872
Pumo3g01783 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 337 362 IPR000571 GO:0046872
Pumo3g01783 428 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 39 64 IPR000571 GO:0046872
Pumo3g01783 428 SUPERFAMILY CCCH zinc finger 338 362 IPR036855 GO:0046872
Pumo3g01783 428 Gene3D - 287 373 - -
Pumo3g01783 428 Gene3D - 35 113 - -
Pumo3g01783 428 SUPERFAMILY CCCH zinc finger 293 319 IPR036855 GO:0046872
Pumo3g01783 428 SUPERFAMILY CCCH zinc finger 131 156 IPR036855 GO:0046872
Pumo3g01783 428 MobiDBLite consensus disorder prediction 230 253 - -
Pumo3g01783 428 FunFam CCCH type zinc finger protein 287 374 - -
Pumo3g01783 428 MobiDBLite consensus disorder prediction 396 428 - -
Pumo3g01783 428 ProSiteProfiles Zinc finger C3H1-type profile. 128 156 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01783 Pumo-Chr3 28859176 28864517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01783 18 427 C2H2 Transcription Factor Family AT3G02830 60.621 1.27e-174 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo3g01783 zf-CCCH 5.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01783 - - gmx:100790771 837.41