Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01780 ATGAAGACACTCACGGGGAACCGTTTCGGTGATGACTGCAGATACTTGTGCCCCGAATCCTATCCACAGGAAAATCTAGAGTTTCTTGAATCGCAAAATATTCGGCTCTTTCACTTTGGTATTGAAGGCAAAACGGATCTCTCTGTGCCTGCCGTTAGGGATACAATCTTGGAGGCTGTCAAAGTTTTGATTGATGTGAGAAATCACCCAGTTTTGATCCACTGCAATCAAGGAAAGCACCGAACTGGTTGCGTTGTTGGTTGCTTGAGGAAATTTCAGGGTTGGTGCTTATCTTCTGTGTTTGATGAGTACAAGCGATTTGCTGGTGCTAAATCCAGGAAAACAGATTTAATGTTCATAGAAACAGTTGACGTATCAAGCCTGAGGCAGTGTCTCAAAAGCATCATATACCAGTACCTAGGATATGCTTCAAAGAAGCTGCGGTTGCTGTATACAGATGAGAATTCACTCAAAGCTCCAGTTAACATCAGTTTAGCTCTTTAA 504 0.4266 MKTLTGNRFGDDCRYLCPESYPQENLEFLESQNIRLFHFGIEGKTDLSVPAVRDTILEAVKVLIDVRNHPVLIHCNQGKHRTGCVVGCLRKFQGWCLSSVFDEYKRFAGAKSRKTDLMFIETVDVSSLRQCLKSIIYQYLGYASKKLRLLYTDENSLKAPVNISLAL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01780 167 ProSitePatterns Tyrosine specific protein phosphatases active site. 73 83 IPR016130 GO:0016311|GO:0016791
Pumo3g01780 167 FunFam Tyrosine phosphatase, putative 12 126 - -
Pumo3g01780 167 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 120 IPR029021 -
Pumo3g01780 167 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 54 86 IPR000387 GO:0016311|GO:0016791
Pumo3g01780 167 PRINTS Plant and fungal dual specificity phosphatase signature 51 65 IPR020428 GO:0016791
Pumo3g01780 167 PRINTS Plant and fungal dual specificity phosphatase signature 15 28 IPR020428 GO:0016791
Pumo3g01780 167 PRINTS Plant and fungal dual specificity phosphatase signature 34 48 IPR020428 GO:0016791
Pumo3g01780 167 Pfam Tyrosine phosphatase family 15 129 IPR004861 -
Pumo3g01780 167 Gene3D Protein tyrosine phosphatase superfamily 12 127 IPR029021 -
Pumo3g01780 167 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01780 Pumo-Chr3 28799094 28800447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01780 15 160 Protein tyrosine phosphatase (PTP) family AT3G02800 65.068 4.09e-70 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01780 K18045 - gmx:100808199 264.618