Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01771 ATGACGTCAATGAACTGGTTGGATTTCTCTCTCTCCCCTCAAGAACTTCCATCACAACCTGTTAATGATGAAGACCACTCTCAAACGGTGACCCCTCTCATTGGCTTCAACTCTCACGAAATCTCAGCCATGGAATGCTTTGATCTCACTTCATTTGGCTTAGTAGAAGCACTCAACAGAAACAATACTCATCATATAACTACTCTAGATTATTGGAACACAAAGGGTTTGGGAACTTCATGCACCAGTAACCAAAATATGGACAACAACCAACAGCACCCGAAACTCGAAAACTTTCTCTTGGAAAAACCGACAACCGGCGGTGGCTGTAGTCCAAAAAACACCAACTCTATTGGGTTGTCCATGATAAAGACATGGCTGAGGAACCAAACGTCACAGTCAGATGCTGCAAACACATCGCTTTCCATGAGCACTAGAGTGTCACAGTCAGGCACAGTAGCGTTGCCCCTTCTAACAGCAGATGGAGAGAGTTCCTCTTCGGAGAGTAAGCAACAACCCTCCACGGTAACACTTGATACTAACCAAAGCGAAGTTGTTAATGTTGACACTGTTCCTAGAAAATCTGCTGACACATTTGGACAGAGGACTTCCATATACCGTGGTGTAACCAGGCATAGATGGACGGGTAGATATGAGGCTCACCTGTGGGACAACAGTAGTAGAAGAGAGGGGCAAACTCGCAAAGGAAAGCAAGAATTAGAAGAAATGAAGAACATGGCAAGGCAAGAGTACGTCGCATCACTGAGAAGGAAGAGTAGTGGCTTTTCTCGCGGTGCATCCATTTATCGAGGAGTAACGAGGCATCACCAACATGGTAGATGGCAAGCTAGGATTGGAAGAGTAGCAGGCAACAAAGATCTCTACTTGGGAACTTTCAGCACTCAAGAAGAGGCAGCAGAGGCATATGACATTGCAGCCATCAAATTCCGAGGACTGAAAGCAGTTACAAACTTCGACATGAACAGATACGACGTTAGAAGCATACTTGAGAGCAACACTTTGCCCATTGGTGGTGGTGCCAAACGTTTGAAAGATGTTGAAAAGGTTGACCTCACCATCATGGATCCTCAGACCCCTCACGTGGATTCTAACATCAATATTTTTGGAGCTTCTCATTCTCTTGCATCTCACCAACCTCAGCTTTATAGCCACTTGAATTACACCTATGGACAAAAGTTTTGGCGCAAGCAAGAACAAGGTTCTGATGTTCCTCATAACTTTCAACAAGATATTCATCAACTCCAACTAGGCAATACTCACAATTTTCTTCACTCCAATGTCATGACCATCGATTCTGCTGCTTCCATCAATATTAATAATAATAATAATAATAGCTCTGGATCTAACTCTGTCATTTATGGTGATGGGGATGATGGTTACACGATTCCCATGGCTACTTCTACGTTCAATATTGCAGATGATGTTGTTAATCAAAATAATAGAGGCAATGGTTTTGCGGATAATGATGTGAAGATGCTTGGTTACGAAAATGTGTTCAGCTCTGCTGATCCTTATCATGCAAGGAACTTGTGTTATCTTTCGCAGCCAACATCTGGTGATGCTGTTAAGGGTAGTGCTTATGATGCATGCAATACTTGGGTGCCAACTGCGATTATTCCAGCTCTTGCACCAAGGCATACCAATATGGCTCTCTGCTCCGGAACTTCACCGTTCACATTGTTGCATGATTAA 1713 0.4349 MTSMNWLDFSLSPQELPSQPVNDEDHSQTVTPLIGFNSHEISAMECFDLTSFGLVEALNRNNTHHITTLDYWNTKGLGTSCTSNQNMDNNQQHPKLENFLLEKPTTGGGCSPKNTNSIGLSMIKTWLRNQTSQSDAANTSLSMSTRVSQSGTVALPLLTADGESSSSESKQQPSTVTLDTNQSEVVNVDTVPRKSADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSSRREGQTRKGKQELEEMKNMARQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLKAVTNFDMNRYDVRSILESNTLPIGGGAKRLKDVEKVDLTIMDPQTPHVDSNINIFGASHSLASHQPQLYSHLNYTYGQKFWRKQEQGSDVPHNFQQDIHQLQLGNTHNFLHSNVMTIDSAASININNNNNNSSGSNSVIYGDGDDGYTIPMATSTFNIADDVVNQNNRGNGFADNDVKMLGYENVFSSADPYHARNLCYLSQPTSGDAVKGSAYDACNTWVPTAIIPALAPRHTNMALCSGTSPFTLLHD 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01771 570 CDD AP2 267 326 IPR001471 GO:0003700|GO:0006355
Pumo3g01771 570 MobiDBLite consensus disorder prediction 1 26 - -
Pumo3g01771 570 Pfam AP2 domain 268 318 IPR001471 GO:0003700|GO:0006355
Pumo3g01771 570 PRINTS Ethylene responsive element binding protein signature 308 328 IPR001471 GO:0003700|GO:0006355
Pumo3g01771 570 PRINTS Ethylene responsive element binding protein signature 206 217 IPR001471 GO:0003700|GO:0006355
Pumo3g01771 570 SUPERFAMILY DNA-binding domain 267 327 IPR016177 GO:0003677
Pumo3g01771 570 Gene3D AP2/ERF domain 205 259 IPR036955 GO:0003700|GO:0006355
Pumo3g01771 570 Gene3D AP2/ERF domain 268 328 IPR036955 GO:0003700|GO:0006355
Pumo3g01771 570 MobiDBLite consensus disorder prediction 161 180 - -
Pumo3g01771 570 SMART rav1_2 268 332 IPR001471 GO:0003700|GO:0006355
Pumo3g01771 570 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 88 238 - -
Pumo3g01771 570 FunFam AP2-like ethylene-responsive transcription factor 267 328 - -
Pumo3g01771 570 Coils Coil 237 257 - -
Pumo3g01771 570 ProSiteProfiles AP2/ERF domain profile. 268 326 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01771 Pumo-Chr3 28212762 28217049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01771 94 353 AP2-EREBP Transcription Factor Family AT5G17430 55.172 6.46e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g01771 AP2 4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01771 K09285 - gmx:100808723 654.44