Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01766 ATGATGGGGACTGAGCTTATGAGAATATGTGTTAAAGAAGATAATGATGATTTTCCATCAGTTCCACCAGGTTTTGAGTCATATACATCTTTCTCACTGAAGAGGGTAGAAAACAATGAAAAACAAGATGATAAAAATATGACCAGTTGTTCAGCCTCTACAAGTGCTTCTGAATCACCATCAACTCAGGTGGAAAATGATGTTCAAGTTCGTGATACTGCAAAGGTTCCTAGATCCCTTCGACGAAGACCATGGATTAATTATGGACAATATGAGAACATTTCAGATGAAGACTCTGACTGTGAGCAGCATGATCAAAATTTCTCCTCAAGACCTTGTCTTCCTCGGGGAGTCATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGGTTGTTGCCAGATGGCGACCAGAAGATGCTCGTAGGCCAAATCTTGAGGATGCTCCTGTTTTCTACCCTACTGAAGAGGAGTTTCAAGACACTTTGAAATATATATCAAGCATTCGCTCGAGGGCTGAGCCATATGGAATTTGTCGCATTGTTCCACCGTCTTCTTGGAAACCCCCTTGTCCTCTCAAGGAAAAAAGTATGTGGGAGGGTTCTAAATTTTCTACACGTGTTCAGAGGATTGACAAACTTCAGAATCGTGATTCAATGAGAAAGATGTCAAAGATTCAAAGTAATATGAAGAGGAAAAGGAGAAGATGCACAAGAATGGGGGTGGATAATAGCACTAGAACAGGACCTAATGCAGGATTTTGTGAAGTTGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGAGATATGCAGAAGATTTTCAGCTCAAATACTTCAGAAAAAATGAGAATGTATCTCATGTGGGTGCCAATACGACAATTTTAAATGGTACCTCAGAGCCTTCTGTGGAGAACATTGAAGGTGAATATTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGATTTTTGGGAGTGGTTTCCCTAGCAAATCTAGTCAAGTAGGTTCTGCTTCACATGAACAGTACATAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGCTACCTGGATCTCTTCTCTCTTACTGA 1137 0.4081 MMGTELMRICVKEDNDDFPSVPPGFESYTSFSLKRVENNEKQDDKNMTSCSASTSASESPSTQVENDVQVRDTAKVPRSLRRRPWINYGQYENISDEDSDCEQHDQNFSSRPCLPRGVIRGCPDCSNCQKVVARWRPEDARRPNLEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLKEKSMWEGSKFSTRVQRIDKLQNRDSMRKMSKIQSNMKRKRRRCTRMGVDNSTRTGPNAGFCEVERFGFEPGPEFTLETFQRYAEDFQLKYFRKNENVSHVGANTTILNGTSEPSVENIEGEYWRMVESPTEEIEVLYGADLETGIFGSGFPSKSSQVGSASHEQYIKSGWNLNNFARLPGSLLSY 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01766 378 PANTHER LYSINE-SPECIFIC DEMETHYLASE 141 378 - -
Pumo3g01766 378 SMART JmjN_1 147 188 IPR003349 -
Pumo3g01766 378 MobiDBLite consensus disorder prediction 36 75 - -
Pumo3g01766 378 Gene3D Cupin 133 378 - -
Pumo3g01766 378 MobiDBLite consensus disorder prediction 45 69 - -
Pumo3g01766 378 MobiDBLite consensus disorder prediction 220 244 - -
Pumo3g01766 378 ProSiteProfiles JmjN domain profile. 148 189 IPR003349 -
Pumo3g01766 378 Pfam jmjN domain 149 182 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01766 Pumo-Chr3 28100213 28102531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01766 2 378 JUMONJI Transcription Factor Family AT1G08620 57.653 7.78e-124 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo3g01766 JmjN 8e-18 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01766 K11446 - gmx:100800271 759.599