Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01765 ATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAAGATCACCATTTATATTCATTGAATTACATGCATTGGGGAGCTCCAAAAATGTGGTATGGTGTCCCTGGAAAAGATGCCTGCAAATTGGAAGAGGCCATGAGAAAGCGTTTACCAGAACTTTTTGAAGAACAGCCTGACTTGCTTCATAAGCTGGTCACTCAGCTTTCTCCTTCTATCCTGAAGTCTAAAGGAGTACCAGTTTATAGGTGTGTCCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGAGCCTACCACTCTGGGTTCAATTGCGGCTTCAACTGTGCTGAGGCCGTTAATGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCTATAGAGCTGTACCAGGAGCAGGGGCGTAAGACTTCTATATCACATGATAAGCTGTTGCTTGGGGCTGCAAGGGAAGCAGTACGAGCCCAATGGGAGCTTAATTTGCTGAAGAAGAATACTTTGGATAATCTACGATGGAAGGATGTCTGTGGAAAGGATGGCCTTTTGGCAAAAGCACTCAAGATGCGTGTTGAGATGGAGCGAGCAAGAAGGGAATTTCTCTGCAGTCCTTCACAGGCATTAAAAATGGAGAGTACTTTTGATGATACAGATGAAAGGGAATGCAACATTTGCTTTTTTGATTTACACCTATCTGCAGCTGGTTGTCGCTGTTCCCCAGATAGATATGCTTGCTTGGATCATGCAAAGCAGTTTTGTTCATGCTCTTGGGATTCCAAATTTTTCCTCTTTCGGTATGATATTAGTGAGCTAAATATTCTTGTGGAGGCATTGGAAGGAAAATTAAGTGCAATATATAGATGGGCTAAATCAGATCTTGGGCTGGCATTATCTTCTTATGTCTCAGCAGGCAAGGAAACAATACGTAAGGAATTGAAATCGGATCCATCCAATTTGTCTCTTTCTTCCAGGGCCACTGTGCATAAAGAGATGGCTTTGCATCCGTCAAATAAATATATTGACGATTCTCAATTGATTGATGTCCCTATAGAGAATCAAGCCAATAGCAAAGATCAGAGCTATTTTCAACAGAGGAAATCGGTTGAAACTATTTCATCTTTGATTTCCATGAAGGAATTGCTAACATTTAAAAGCTCAAAACCTACATCTGAGATGACTAATCATAAGATCTGTGTTAATAAAGAAGAATCGGTTATTTGCAGATCAAATATGAGAACCCCTGGTTGTCAATTGTCTCAAGAAGATACATCTGTGCCTCTAACTCAACATGGAGGTGAAAAAAGTATTATACTTCTTAGTGACGATGAAGATGATGGAAAGATGTCCGATTCAAATAGAAGGAAGGAACTTCCTTTGATGCTTGCAGGTCCTAGAGATAAGGCAAGCCCATGTAACGATATAGAAAATACAAAGTTGACCATTTCTGTGACAGATTCTGCTCTGATGGGTGAAAAGGATGCTATTACATTGCCACGTGAAAATATGAGTTCTGATTCAACTCAGCTTTTGCATGTGAAACAAGAATGTCATGAACACACAGGAACAGTTCTAGCCTCTACCCGAGTAGATATTTCTTGTCATATGGGTCTTTCAAGTACAGAATCTACTAGAAATATTCCAGCTCCTTCAAAAGTAGAGGCCAGTGATCATTGTTTGGAAAGTTTGGAGGCTTGTCCTCTGAACCCTCAACTTTCTGGGATTAAGGTTAAGACTGAAGATAATCATGAAAAGTTTGGAGGATGTGCCACTTCTAATGTAGCAGACAATGCAAGAGCTGTTAATGGGAACTTTTCTTGTGGTCCAAACAATTACCGTCAGAAAGGTCCTCGAATTGCAAAGGTTGTCCGGCGCATCAACTGCAATGTTGAACCATTAGAATTTGGAGTTGTGCTCTCTGGAAAGTCTTGGTGCAGTAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGTGTTAGATACATAAATGTCTTAGATCCATCCAGTATGTGTTACTATGTTTCAGAAATACTTGATGCTGGACGTGGTTGGCCTCTATTTATGGTTTCCTTGGAAAATTGTCCAAGTGAAGTCTTCATTCACGTGTCAGCTGCAAGATGCTGGGAACTGGTTAGAGAGAAAGTGAATCAGGAAATCGCAAAGCAACATAAGCTGGGAAGAAAGGGTCTTCCTCCATTACAGCCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCATCACCAGCAATAGTGCAGGCTATTGAGGCGCTGGATCGAAGTCGAGTATGTAATGAATATTGGGACTCACGGCCCTACTCTCGTCCTCAGGGCCAGATTTCACAATCATGCCAAACCAATAATGCCAATGGTGGAAATGGTGAAGGGGTTGTCTTGAATAAGCACATGCCCGTTGAAGATGTTGCAGTACTAAGGAGCCTATTTAAAAAGGCTAATGCAGAACAATTGAACTTATTGTACAGCATTCTTAGTGACAATAGGCCAGAGGCTGACAGGAACCTAATTGCGCAACTTCTCAATGAAGAGATTCACAAATCACAACCGCCCTAG 2562 0.418 MCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEEAMRKRLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYQEQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNTLDNLRWKDVCGKDGLLAKALKMRVEMERARREFLCSPSQALKMESTFDDTDERECNICFFDLHLSAAGCRCSPDRYACLDHAKQFCSCSWDSKFFLFRYDISELNILVEALEGKLSAIYRWAKSDLGLALSSYVSAGKETIRKELKSDPSNLSLSSRATVHKEMALHPSNKYIDDSQLIDVPIENQANSKDQSYFQQRKSVETISSLISMKELLTFKSSKPTSEMTNHKICVNKEESVICRSNMRTPGCQLSQEDTSVPLTQHGGEKSIILLSDDEDDGKMSDSNRRKELPLMLAGPRDKASPCNDIENTKLTISVTDSALMGEKDAITLPRENMSSDSTQLLHVKQECHEHTGTVLASTRVDISCHMGLSSTESTRNIPAPSKVEASDHCLESLEACPLNPQLSGIKVKTEDNHEKFGGCATSNVADNARAVNGNFSCGPNNYRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINVLDPSSMCYYVSEILDAGRGWPLFMVSLENCPSEVFIHVSAARCWELVREKVNQEIAKQHKLGRKGLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDRSRVCNEYWDSRPYSRPQGQISQSCQTNNANGGNGEGVVLNKHMPVEDVAVLRSLFKKANAEQLNLLYSILSDNRPEADRNLIAQLLNEEIHKSQPP 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01765 853 Pfam JmjC domain, hydroxylase 1 112 IPR003347 -
Pumo3g01765 853 ProSiteProfiles FYR domain FYRN motif profile. 618 676 IPR003888 GO:0005634
Pumo3g01765 853 ProSiteProfiles FYR domain FYRC motif profile. 678 768 IPR003889 GO:0005634
Pumo3g01765 853 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 727 - -
Pumo3g01765 853 SMART cupin_9 1 129 IPR003347 -
Pumo3g01765 853 Gene3D - 625 762 - -
Pumo3g01765 853 SMART fyrc_3 682 776 IPR003889 GO:0005634
Pumo3g01765 853 SUPERFAMILY Clavaminate synthase-like 1 156 - -
Pumo3g01765 853 Gene3D Cupin 1 172 - -
Pumo3g01765 853 Coils Coil 176 196 - -
Pumo3g01765 853 SMART fyrn_3 632 676 IPR003888 GO:0005634
Pumo3g01765 853 ProSiteProfiles JmjC domain profile. 1 129 IPR003347 -
Pumo3g01765 853 Pfam C5HC2 zinc finger 219 269 IPR004198 -
Pumo3g01765 853 Pfam F/Y rich C-terminus 681 764 IPR003889 GO:0005634
Pumo3g01765 853 FunFam Putative lysine-specific demethylase JMJ16 624 762 - -
Pumo3g01765 853 Pfam F/Y-rich N-terminus 631 673 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01765 Pumo-Chr3 28095336 28100166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01765 1 848 JUMONJI Transcription Factor Family AT1G08620 53.425 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo3g01765 JmjC 1.4e-42 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01765 K11446 - gmx:100809262 1603.96