Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01744 ATGGACAGGAATTCGAGCTGCGTCTCTCCAAATTACATGGCTAGTCAATTTGACATTAATGAGAGGATGAGGGCCATTCTTATTGACTGGCTTATTGAGGTTCACTACAAATTTGAGCTTTTGGAGGAGACATTGTTCCTTACTGTCAATCTCATAGACAGGTTCTTGGAGCGTCAGGCTGTGATCAGAAAGAAACTTCAGTTAGTTGGTATAACAGCTATGCTAATAGCTTGTAAGTACGAGGAGGTCTCAGTCCCTACCGTTGAGGATTTTGTTCTGTTAACAAACAAGGCAAATGAAGTCTTATATATGCTGGAGCTCTTGTCCTTCTTCTTGATCGAGCTTTGCTTGGTGGAGTGCAAAATGCTGAAGTTTCCACCATCTTTGCTAGCTGCTGCAGCCATATACACAGCTCAATATAGTCTGTACCAGTTTATGCAATGGACTAAGGCCAGCGAGGGGTTATACTGA 471 0.4268 MDRNSSCVSPNYMASQFDINERMRAILIDWLIEVHYKFELLEETLFLTVNLIDRFLERQAVIRKKLQLVGITAMLIACKYEEVSVPTVEDFVLLTNKANEVLYMLELLSFFLIELCLVECKMLKFPPSLLAAAAIYTAQYSLYQFMQWTKASEGLY 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01744 156 Gene3D - 111 144 - -
Pumo3g01744 156 FunFam G2/mitotic-specific cyclin 8 118 - -
Pumo3g01744 156 ProSitePatterns Cyclins signature. 24 55 IPR006671 -
Pumo3g01744 156 PANTHER CYCLINS 6 140 IPR039361 -
Pumo3g01744 156 Pfam Cyclin, N-terminal domain 6 101 IPR006671 -
Pumo3g01744 156 SMART cyclin_7 29 110 IPR013763 -
Pumo3g01744 156 Gene3D - 8 98 - -
Pumo3g01744 156 SUPERFAMILY Cyclin-like 7 99 IPR036915 -
Pumo3g01744 156 SUPERFAMILY Cyclin-like 85 151 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01744 Pumo-Chr3 27772517 27773541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01744 6 153 Core Cell Cycle Gene Families AT1G20610 55.435 1.24e-62 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01744 K21777 - gmx:100819848 235.343