Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01712 ATGGCAACTAGACTTCAGTTTGAGAATAATTGTGAAGTTGGAGTCTTCTCAAAACTTACCAATGCCTATTGTTTGGTTGCCATTGGAGGTTCCGAAAACTTCTACAGTGCATTTGAAGCTGAATTAGCAGATGTTATCCCTGTGGTCAAGACCTCCATCGGTGGCACTCGTATTGTTGGTCGTCTTTGTGTTGGAAACAAGAACGGGCTTCTCTTGCCCCATACCACCACAGACCAAGAGCTTCAACATTTGAGAAACAGTCTACCTGATCAAGTAGTTGTTCAGCGTATAGAAGAAAGATTATCCGCTCTGGGAAATTGTATTGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAGGAAACTGAGGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACTATTGCGGGTAATATTCTTGTTGGCAGTTACTGTGTATTCTCCAACAGAGGTGGTTTGGTCCACCCTCATACTTCCATTGAAGACTTGGATGAACTTTCTACACTTCTTCAGGTTCCTTTGGTTGCTGGGACTGTCAATCGCGGTAGTGAAGTAATAGCTGCTGGCATGACAGTAAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACAGAGCTCTCTGTGATTGAGAGTGTTTTCAAGCTGAGAGAAGCCCAACCTAGTGCCATTGTGGATGAGATGAGGAAATCACTCATTGATACATATGTCTAA 738 0.435 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELADVIPVVKTSIGGTRIVGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDKETEEMIADVLGVEVFRQTIAGNILVGSYCVFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDTYV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01712 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Pumo3g01712 245 FunFam Eukaryotic translation initiation factor 6 1 225 - -
Pumo3g01712 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Pumo3g01712 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256|GO:0043022
Pumo3g01712 245 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Pumo3g01712 245 Gene3D - 1 225 - -
Pumo3g01712 245 SUPERFAMILY Pentein 1 224 - -
Pumo3g01712 245 NCBIfam translation initiation factor IF-6 4 224 IPR002769 GO:0042256|GO:0043022
Pumo3g01712 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 244 IPR002769 GO:0042256|GO:0043022
Pumo3g01712 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01712 Pumo-Chr3 26663140 26666292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01712 1 245 Eukaryotic Initiation Factors Gene Family AT3G55620 92.245 1.08e-174 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01712 K03264 - gmx:100777602 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02795 6 66385331 66389077 Pumo3g01712 3 26663140 26666292 PCT