Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01707 ATGGCGGTTCGCAAAACCGCGATACCCCCACAGTCACAAATAGGTGCCGCTCTTCGAAGGCCAGTGGAAGAAGAGCTTTGTGAATCGGTGCCTGCAAACATTTGGAATGATGACGAATTCCGATTCCCACCGGAAGAATTATGCGACATTGCTTCACCGTCGAATATGGAAAAATCCCTAAAATTTGGGTATAAATTAGGGAAGAAGACGGTGGATGTGCCTATGCCCAACGCAGAAACTGCACAGCAGCATTGGTGGTGGCAACTTGGTTGCAACTCAAAAGCCCTTTCCCCTGCTTCTTCCACGGCCAACCTCTCCTTCCCTCCACCAATGGCTTCCAGGCGTTTGAGGGCATTCAAGCGGTGGATGAAGTCCAAGGGGTTCGAATGGAGCAATGCACTGGAGTTTGTGGACACCCCAGAAGAGGGAATAGCGGTGAGAGCATTGTGCCAATTGAAGGAAGGTGATGTTGTGGCCAAGATGCCAAAGGAAGCTTGCCTCACCACAAAGACTAGTGGGGCACGTGAGATCATTGAAGAGGCTGGTTTGGATGGTCATTTGGGGCTGGCATTTGGCATCATGTTTGAGAGAAGCTTGGGTGGGGACTCCCCTTGGGCTGGCTATCTTCAACTCTTGCCTTTCCAAGAGTGCGTGCCAATTGTTTGGACCCTCGATGAAGTAAACGAGCTTTTGTGTGGTACTGAGCTTCACCAGACAGTGCAAGAAGACAAGGCTCTTATCTATGAGGACTGGAAAGAGAATATTCTTCCCCTATTGGATTTAGCACCTTCAAAACTAAACCCAAAGTTCTTTGGCATAGAACAATACTTTGCAGTAAAAAGTCTTATATCTTCACGATCTTTTGAGATTGATGATTACCATGGTTTTGGCTTGGTTCCCTTGGCAGATCTATTCAATCATAAAACAGGTGCGGAGGATGTGCATTTCACCGCTATGTCCTCTAATGATGAATCTGATACTGATGTTGATGGTTGTAACAATGATGAGGGCATTGTCGAGGAAGAAGCATTGGCTCAAAATTCCTCTATAGATATGACTGTGTTAAATACTGCTAATAATGGGAACTGCAATGTTAGCGACTTGGATAGTTCTTCAGTTAGCGAGGGTGATACTTCTATGCTGGAGATGATTATGATAAAAGATGTCAGCAGTGGAACTGAGGTATTTAATACTTATGGGCTATTGGGTAATGCTGCTTTGCTTCATAGATATGGATTTACTGAGCAAGATAATTCCTATGATATTGTAAACATAGATATGGAACTGGTACTTAAATGGTGTTCTTCCGTGTTTTCTGACCGCCACAGTAGAGCAAGAGTTTCCCTTTGGAGAAGGTTAAGCTATTCTGCATGTGGCAGCCCAAACTCTGAATATTTTGAGATCTCATTTGATGGGGAACCACAGATTGAACTCCTCATTTTATTACACATCATGTTATTATCAGATAATGCCTACCATAAGTTAGACCTATCGGTATCGGTTGCCGGAAATTGTCATGATTTAAGTGGAACCATCCTTCTGAATGGCAATATCTTTCCTAGTAAAGCATTTAATATGAGCAAGAAATCCTTGCTGCCTAAAAAAGTTTGTGATGCCCTGTTATCACTTGCTGATATGAGGGAGAGTCTCTATGGTTTGAAATCAATTGAAGATGATATTGAGGCATTGGGAAGGTGTAGTTTAGTTAGAGAGAGAAAGCTGTATCATTCTTTGATGCTGCGCATCAATGAAAGGAAGATCCTTCAAAAGCTCAGAAATTATGCTTCGCAGCCATTTAAAAATAAAATCACCACCCATAGTTCTCCGAGGAAGAAGTTGAAAAGGACAACAAAGAAAACGAGTTGA 1866 0.4314 MAVRKTAIPPQSQIGAALRRPVEEELCESVPANIWNDDEFRFPPEELCDIASPSNMEKSLKFGYKLGKKTVDVPMPNAETAQQHWWWQLGCNSKALSPASSTANLSFPPPMASRRLRAFKRWMKSKGFEWSNALEFVDTPEEGIAVRALCQLKEGDVVAKMPKEACLTTKTSGAREIIEEAGLDGHLGLAFGIMFERSLGGDSPWAGYLQLLPFQECVPIVWTLDEVNELLCGTELHQTVQEDKALIYEDWKENILPLLDLAPSKLNPKFFGIEQYFAVKSLISSRSFEIDDYHGFGLVPLADLFNHKTGAEDVHFTAMSSNDESDTDVDGCNNDEGIVEEEALAQNSSIDMTVLNTANNGNCNVSDLDSSSVSEGDTSMLEMIMIKDVSSGTEVFNTYGLLGNAALLHRYGFTEQDNSYDIVNIDMELVLKWCSSVFSDRHSRARVSLWRRLSYSACGSPNSEYFEISFDGEPQIELLILLHIMLLSDNAYHKLDLSVSVAGNCHDLSGTILLNGNIFPSKAFNMSKKSLLPKKVCDALLSLADMRESLYGLKSIEDDIEALGRCSLVRERKLYHSLMLRINERKILQKLRNYASQPFKNKITTHSSPRKKLKRTTKKTS 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01707 621 SUPERFAMILY SET domain 370 419 IPR046341 -
Pumo3g01707 621 Pfam SET domain 143 400 IPR001214 GO:0005515
Pumo3g01707 621 CDD SET_LSMT 133 414 - -
Pumo3g01707 621 MobiDBLite consensus disorder prediction 599 621 - -
Pumo3g01707 621 Gene3D set domain protein methyltransferase, domain 1 112 413 - -
Pumo3g01707 621 MobiDBLite consensus disorder prediction 605 621 - -
Pumo3g01707 621 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 102 561 - -
Pumo3g01707 621 SUPERFAMILY SET domain 113 317 IPR046341 -
Pumo3g01707 621 ProSiteProfiles SET domain profile. 132 400 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01707 Pumo-Chr3 26619060 26623158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01707 112 620 NAC Transcription Factor Family AT3G56570 53.172 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo3g01707 SET 5.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01707 - K05302 gmx:100794971 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01707 3 26619060 26623158 Pumo3g01707 3 26619060 26623158 ECH