Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01705 ATGGAGTCTAGCAATTTTCATGCTGAAAAAGTGGCAGATAAAAAGATAATAAGATACAAGGAGTGTCTGAAGAACCATGCAGCTGCAATTGGTGGCAATGCAACTGATGGGTGTGGTGAGTTCATGGCTGCAGGAGAAGAAGGCACCCTTGAGGCTCTCATGTGCTCAGCTTGCAATTGCCACAGAAATTTCCACAGAAAAGAGATAGAGTCATCTGATTCTAATTCCATTCCTCTGATTATTATTCCTGATAGTACTACTCAGGATAAGGCCCATTTTGGCTCATTTGTCTCCCAACAAAAGTGGCTCTATTAG 315 0.4222 MESSNFHAEKVADKKIIRYKECLKNHAAAIGGNATDGCGEFMAAGEEGTLEALMCSACNCHRNFHRKEIESSDSNSIPLIIIPDSTTQDKAHFGSFVSQQKWLY 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01705 104 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 78 - -
Pumo3g01705 104 Pfam ZF-HD protein dimerisation region 17 69 IPR006456 -
Pumo3g01705 104 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 68 IPR006456 -
Pumo3g01705 104 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 18 69 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01705 Pumo-Chr3 26610382 26611228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01705 11 70 ZF-HD Transcription Factor Family AT1G14440 76.667 1.74e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo3g01705 ZF-HD_dimer 2.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01705 - - gmx:100793926 165.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01705 3 26610382 26611228 Pumo3g01705 3 26610382 26611228 ECH