Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01703 ATGGTTGTGAGCGGAGGGAAGGGCCTGAAACGCGCCGCGAAGAAGAGAGTCACCGCCGATTTCTACGACTTCCTCACGTTCCCCACGCCGGCCCTCGCCGAGGCGGAGAACTTCGCCGGCGGACCGTTCCGCTCCAACGTGCGCTCCTTCCTGACGAAGCACGCGCTGCTTCCGCCGCCGTCGGCGCTCTTCCCGCACCTGCTGACGTGGCAGATCGTCTTCCGCGTCGGCGAACTAACCGAAGGCCCCGACGCGCCGGTGGTGTGCCTCGACGTCGTCGAGGAGGACGTCGCCAGATCCAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGGTTGGAGCGGCCATCCAGTGTGCGGGAAACGTTACCATTTTATAATCAAAGCCGATGGGAGCTCCATTGGTGGGTACCACAAGCCGTGTATGTGCTGTGGAGACATCTTGCATTTGTCAGAATCCAAATGCAAGTCATGCAACCATGTGACTACCACTGATGATGTCGAAGACTGGGTGTACCACCAATTAGAGAACACAACTCATCTTTTACATGGTGTAGTCCATGCCAATGGATATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGTTCTAGATTTCTTTCTGGTATTCATATTATGGATTTCTGGGATCGCCTATGCAAGACTCTTGGAGTCAGAAAAGTTAGCGTGATGGATGTTTCAAAGAAATACGGGTTAGAGTATCGCTTGCTCCATGCCATTATGAAGGGACACCCGTGGTATGGTGACTGGGGTTATAAATTTGGCTCTGGTAGCTATTGCCTCACACATGAAGCATACAAGTCTGCTGTTGAAAGCCTATCCAATCTACCCTTGTCCACCTTTTCCCAGGGACAGATGCCCAACTCTCGTGTGCAGGACATGATCAAATATTACCAGTCTTTGTCAGAGCACGAGCTTGTAAATATAAGGGACCTCTTTTGTTTCATAATGGGTTTGATTGGTGAAGCTTGCAAGACTGCATCAAATGTTGACGAGACAACCTGCAAGAAGCGTCGTTTTAATGCTTTTGGACTCTCAATTTCTTGGGATAAGAGTGACATTGAACGTGTGGAGCAAGCCATGGTCAGAGTGCTACGTGCAGTGTCCGAGTCTAAGTGGGTGAGCTGGCGTGCTCTTAGGGGTGCAGCCTCCAAGGCAGGCTCTCCAGAGCTGCTTGATTATTGCCTTGGAGAATTGGGAGGAAAAATGGTCTATGGTGGAATGGTTGTTAATAGCCGATGCAATCCTCAAACTGGAGTTTATGAGTTCAGACTCGAGGCTGCGACTAGTGCTTGCTATGGAATTTTAGCGAACAATAACTCTTCAGGCTCAAAGTATCCATCTGAAGAAAACCTCCTACAATGCTTAAGATATTTATACGATTCTTTACTTCATCCTCAGATGATGGTAAACTATGAAGCAGGGACAAGGACTCTTGCAATGAGCTCAGCTCAGAAGCTTTTTGACTGCAAGCAGTTTGTAAAAGATTATAGTCCTGAGATGTTGCCATTGTCAGATTTGCAGAAGTTTCGCATCTCATGTCACGTTGAACTTGTAGATGAACCTGAAGATTCAGAAGCTATAACTCCACCAGAATTAATTGTGCTGCCCCTGAATGCCACGGTGGCTGAGCTTAAGAATCAAGCAGCAAATGCTTTCCAAGATGTGTATCTAATGTTCAGAAGATTTCAAGTTGATGAGCTACATGGCTATGGCGGTGTTGACGATTCCACCCAGGTCAAGCTCTTGTTAGGATCGAAAGATGTGATTTGTGTCCGAGGAAGATGCATTGGGAAGAATGGGTTGAGCAAGTTCCGAATGGAACGGGGACTTGAGAGGTGGACCGTAGATTGCAGCTGTGGAGCCAAGGATGATGATGGAGAGAGAATGTTGGCGTGTGATATATGTGGAGTGTGGCGACACACTAGGTGTTCTGACATCCATGATACTGATCCTGTTCCAGCACGTTTTGTTTGCCTGAAATGCCAAAACTGTGAATCAAAACTCAAATCTAGTGGGCACTGCAAAGATGAGACTGTGACTAACGTTAGTGGTAGTAGTTGCTTCAGAAACGGCTTGCCAGTGCCATCTGATGTTATTTGA 2124 0.4826 MVVSGGKGLKRAAKKRVTADFYDFLTFPTPALAEAENFAGGPFRSNVRSFLTKHALLPPPSALFPHLLTWQIVFRVGELTEGPDAPVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGIHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKGHPWYGDWGYKFGSGSYCLTHEAYKSAVESLSNLPLSTFSQGQMPNSRVQDMIKYYQSLSEHELVNIRDLFCFIMGLIGEACKTASNVDETTCKKRRFNAFGLSISWDKSDIERVEQAMVRVLRAVSESKWVSWRALRGAASKAGSPELLDYCLGELGGKMVYGGMVVNSRCNPQTGVYEFRLEAATSACYGILANNNSSGSKYPSEENLLQCLRYLYDSLLHPQMMVNYEAGTRTLAMSSAQKLFDCKQFVKDYSPEMLPLSDLQKFRISCHVELVDEPEDSEAITPPELIVLPLNATVAELKNQAANAFQDVYLMFRRFQVDELHGYGGVDDSTQVKLLLGSKDVICVRGRCIGKNGLSKFRMERGLERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSDIHDTDPVPARFVCLKCQNCESKLKSSGHCKDETVTNVSGSSCFRNGLPVPSDVI 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01703 707 CDD PHD_MMD1_like 624 669 - -
Pumo3g01703 707 ProSitePatterns Uncharacterized protein family UPF0054 signature. 183 193 IPR020549 -
Pumo3g01703 707 Pfam PHD-finger 625 672 IPR019787 -
Pumo3g01703 707 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 15 684 - -
Pumo3g01703 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 675 IPR013083 -
Pumo3g01703 707 SUPERFAMILY FYVE/PHD zinc finger 613 671 IPR011011 -
Pumo3g01703 707 SMART PHD_3 624 670 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01703 Pumo-Chr3 26593697 26599075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01703 78 669 PHD Transcription Factor Family AT5G22260 30.284 1.65e-85 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo3g01703 PHD 5.7e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01703 K26271 - gmx:100818189 1415.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01703 3 26593697 26599075 Pumo3g01703 3 26593697 26599075 ECH