Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01689 ATGGCTTCCCTGGCGGCTTCCACCGCGGCTATGTCATCAGAAATGCTTGGAAACCCCGTGAGCCTCAGTGGCGCCACCAGGTCTGCTCCATCACCATCTACACCTGCTACCTTCAAGACCGTTGCTCTTTTCTCCAAGAAGAAGGCTGCTCCACCTCCTCCAAAGAAAAAGCCTGCTGCTGTATCCCCCGCCAATGAGGAACTCGCCAAGTGGTATGGTCCTGACAGAAGGATCTTCTTGCCTGAGGGTCTCTTGGACAGATCAGAGATCCCCGAGTACTTGACCGGAGAAGTGCCTGGAGATTATGGTTATGACCCGTTTGGTCTTAGCAAGAAGCCAGAGGACTTTGCCAAATACCAGGCGTTTGAGTTGATTCATGCCAGATGGGCAATGCTCGGTGCTGCTGGTTTCATCATTCCTGAGGCCTTTAACAAATACGGAGCTAACTGTGGTCCTGAGGCTGTTTGGTTCAAGACCGGAGCTTTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCTATCCCCATCAATCTTATTGTTGCTGTTATTGCTGAGATAGTTCTTGTGGGTGGTGCTGAGTATTACAGAATTATTAATGGCCTGGATTTCGAAGACAAGCTTCACCCAGGTGGTCCATTCGACCCATTGGGCCTAGCAAACGATCCAGACCAAGCTGCACTTCTAAAGGTGAAGGAAATTAAGAATGGTAGACTTGCTATGTTTGCAATGCTTGGTTTCTACTTCCAAGCTTATGTCACTGGAGAAGGTCCAGTTGAGAACTTGGCCAAACATCTCAGTGACCCTTTTGGTAACAACTTGCTCACTGTGATTGCTGGGACTGCTGAGAGGGCTCCAACTCTGTAA 870 0.4943 MASLAASTAAMSSEMLGNPVSLSGATRSAPSPSTPATFKTVALFSKKKAAPPPPKKKPAAVSPANEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLDFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01689 289 Gene3D Chlorophyll a/b binding protein domain 78 289 - -
Pumo3g01689 289 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 26 278 IPR001344 GO:0009765|GO:0016020
Pumo3g01689 289 FunFam Chlorophyll a-b binding protein, chloroplastic 78 289 - -
Pumo3g01689 289 Pfam Chlorophyll A-B binding protein 91 252 IPR022796 -
Pumo3g01689 289 SUPERFAMILY Chlorophyll a-b binding protein 70 280 - -
Pumo3g01689 289 MobiDBLite consensus disorder prediction 17 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01689 Pumo-Chr3 26013774 26016735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01689 1 289 Chloroplast and Mitochondria Gene Families AT4G10340 80.345 9.97e-152 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01689 K08916 - gmx:100817348 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01689 3 26013774 26016735 Pumo3g01689 3 26013774 26016735 ECH
Pumo6g02733 6 65627971 65630592 Pumo3g01689 3 26013774 26016735 PCT