Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01685 ATGGAGGGAAGAGAGAATTTTGGTGTTGTGGTGGGTGATGAGGCCCCAGAGAGCTTCCATGTGGCTCCTAGAATTGAGAACAACTTGGACTTTTCAAGGGCCACCGTGCCGGCGCCGGCACCGGCGACGGAGGGGAAAAAGAAGAGAGGGAGGCCGAGGAAGTATGGGCCGGATGGGAAGCCGGCGTTGGGGGCGGTGACGGCGCTTTCGCCGATGCCGATTTCGTCGTCGATTCCGTTGACCGGCGAGTTCTCAGCTTGGAAGAGGGGTAGAGGGAGGCCTGTTGAATCTATCAAGAAGTCATCGTTTAAGTTTGAGGTTGAAAACCAAGGACCAGGTGAGGGAATAGCATACTCAGTTGGTGCCAATTTCACACCACATGTGCTCACAGTAAATGCCGGCGAGGATGTCACTATGAAGATTATGTCCTTCTCTCAACAAGGATCACGTGCTATATGCATTCTCTCAGCAACTGGGACAATTTCAAATGTTACACTTCGTCAACCATCTTCTTGTGGGGGTACTTTAACCTATGAGGGACGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAATTACAAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCTGGTCCAGATGGTCGAGTAATGGGGGGTGGCCTTGCTGGTTTGTTGGTAGCTGCTGGTCCAGTGCAGGTTGTGGTGGCCAGTTTTCTTCCTGGTCACCAGTTGGAGCATAAAACCAAGAAGCAAAGGGTGGAGCATATATCAGCTATTAGCCCTTCACCTGTTAATCTTATCACTAGTGAGGAAATAAAAGTAAGTTTTGGTGGAGTAAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAGAATATAGCTTCTTTTAACAATGGTCAAGACTCTAGGAACTCATCTGCTGATGACAAAGATCCTTTACCTGAAAAGGAGTCTAACCTAAGCCAATAA 972 0.4835 MEGRENFGVVVGDEAPESFHVAPRIENNLDFSRATVPAPAPATEGKKKRGRPRKYGPDGKPALGAVTALSPMPISSSIPLTGEFSAWKRGRGRPVESIKKSSFKFEVENQGPGEGIAYSVGANFTPHVLTVNAGEDVTMKIMSFSQQGSRAICILSATGTISNVTLRQPSSCGGTLTYEGRFEILSLSGSFMPTENGITRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVASFLPGHQLEHKTKKQRVEHISAISPSPVNLITSEEIKVSFGGVKPIMTPAAFQEENIASFNNGQDSRNSSADDKDPLPEKESNLSQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01685 323 Gene3D - 126 258 - -
Pumo3g01685 323 CDD DUF296 125 239 IPR005175 -
Pumo3g01685 323 MobiDBLite consensus disorder prediction 291 323 - -
Pumo3g01685 323 MobiDBLite consensus disorder prediction 31 60 - -
Pumo3g01685 323 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 307 IPR039605 GO:0003680
Pumo3g01685 323 SMART AT_hook_2 88 100 IPR017956 GO:0003677
Pumo3g01685 323 SMART AT_hook_2 46 58 IPR017956 GO:0003677
Pumo3g01685 323 MobiDBLite consensus disorder prediction 305 323 - -
Pumo3g01685 323 ProSiteProfiles PPC domain profile profile. 121 263 IPR005175 -
Pumo3g01685 323 FunFam AT-hook motif nuclear-localized protein 1-like 126 257 - -
Pumo3g01685 323 SUPERFAMILY AF0104/ALDC/Ptd012-like 123 242 - -
Pumo3g01685 323 Pfam Plants and Prokaryotes Conserved (PCC) domain 126 239 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01685 Pumo-Chr3 25943886 25950131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01685 42 314 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 57.746 6.18e-89 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01685 - - gmx:100776862 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02724 6 65507693 65513847 Pumo3g01685 3 25943886 25950131 ECH
Pumo3g01685 3 25943886 25950131 Pumo3g01685 3 25943886 25950131 ECH
Pumo6g02724 6 65507693 65513847 Pumo3g01685 3 25943886 25950131 PCT