Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01671 ATGGCAGCAGGATTGGAACTCATACCCATAGGTACAATTTTGACAGTGGTAACTAACCAAGTCTTGAAAACAGCTCACGCAGCATCTGATGTTCTTATTGGTAAAGAAAGTTTCAAGGCCCTTTCAAAACATCTATTTGATATTGAGCCAGTGCTAAAGGAATTACAGCTTCAAGAATTGAATGACTCTCAAGCCGCAAGGGTTGCTCTGGAGTCTCTTGAAGCAGATGTTAAGAAGGCAAATAATTTGGTCGACAAGTATAGGAACCGTGGCCGTTTTTACTTACTGATCAAGTGTCGATCCATAGTTGAGGAGGTTGAACAAGTCACTAGGGATATTGGAAAGTCTCTGGCTGCATTGTCTATTGCAAATACTGAAGTCCTATCAAGAATTTCTGATCAGGTCAATAGACTACAAAATGAGATGCAAAGGGTGGAGTTTGAGGCTTCACAATCTCAGATTCAAATTGTTGACAAGTTGAACCAGGGACTTAGAGAACAGAAACTAGACCAGGCTTTTGCAAATGACATGTTAGAGGAGATAGCAAGGGCAGTTGGGGTGCCAGTGGAACCCTCAGAGATAAGCAAAGAGTTGGCCAGCATTAAGAAGGAAAAAGAAGAAGCTTCTGACAGGAAAGAAAGAGCTGAATGTGTCCTTTTGGACCAGATCATTCAGTTACTCTCTCGAGCTGATGCGGCAAGGGATTATGAAGAAGTGGAGAGGCAATACTTTGAAAGGGTTAAGGTGATAGAGAGATATGATTCAAGGGAAAAATATATAACCCCACTCAAACCTTTCCATTGTTCTATAACTGGAGCTGTTATGGGAGATCCTGTCAGCCTTTGCACTGGTACTACATGTGAGAGATCTGCTATTGAAGCTTGGTTTAATGATGGCAACAGGACAGACCCAGAAACTAAAGAGGTTCTTGAAGATACTACCTTGAGGTCTAACATTCCACTAAGACAGTCCATTGAAGAGTGGAGAGAACTTAATTACTGTCTGGTAATAAGGTCTATCAAGGAAAATTTATTATCATATCCTGATCTGCAAGAATCCCTGAGCCAAATGCAGGCTCTAGTAAGAGAGAATTCTATTAACAAGGATTGGATTTCTATAGGAGGGCTTACTGATATTGTTATCTCTATCCTTGGGAGCTCTGATGACAGAGAAGTGAAGATGAAGATTTTGATAGCTTTGAAGGATGCTGTAGAGGGGAATACAAGAAACAAGGAGAAAGTAGCTGAATCTCAAGGATGGGATCACATTATTTCCTGCTTAGGGAGTGACTCTAACATTTCAAAGGCAGCAATTGATTTATTATATGAGTTGCTTCAAGAACAATCTGGGTGGAATCAATGTCTCTGCAAAAAGCTTTCTGAAAATCGCACTGCAGTTCGGTCCCTTGTCACCCTTCTAAAGAATCGTGTCAACCATTCTGCTGAGGTTGCTGAAAAGATGTTGATGAAGCTTTTTGAACTAAATGAGGAAACCATTACTATTGCTGCTAATTTTGGCTGGTATAAACCACTTGTTGATCGCATGATTCAAGGACCAGATTCAAGAATATCAATGACAAAAGCCATAGTTAATTTGGAGTTGAATGATTCAAACTTGAAACTCCTTGGCAAGGAAGGAGTTATACCTCCGTTGCTAGAAATGCTGTCGGGCAATATTGAATCAAAAGACTTGTCATTGTCAGCCCTGGTTAAATTAGCAGTATCTCATGCCAATAAGGGAATTATTGCTGCATCTGGAGGAGTCCCTCTTATTATAGATTTAATGTTCTCTCCTCGGTCTCGGACACTCATTATCATTAAATGCTCTGAAATCATTGAGAAGCTTTCTTCAGATGGTGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAAACAACTTGAGTTAGATTCCATCATCACCAATTTGCTAGCTTTGCAGCAGAATTCCAGTCACAACATCTGTAAGCCTGCACTGCGTGCACTTCTTGGCATTTGCAAGTTTGAGACCGGTTTGGTTAAGAAAGCAATTCTTGCAGCCAATGGTGTATCTCTAATTCTTCCACTTCTTGATGATTCTGACTCAGAAATCAGGGAGACTTCCATAATTCTTCTCTTTCTTTTCTCTCAACACGAGCCAGAAGGAGTAGTTGAATACCTCTTCAGGCCTAGAAGGCTTGAAGCCTTGATTGGATTTCTTGAGAATGAAGAAAACGATAATGTGCAGATGGCTGCTGCTGGTTTACTGGCCAACCTGCCAAAATCAGAACGAGAACTCACTATGAAGTTGATTGAGTTGGGTGGACTTGATGCAATCATAAGCATTTTGAAGACTGGCAAAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGACCCTACAAATATTGAGTCACAGCGAGATTTGGTTAAACGCGGAATATACCCTTTGCTTGTAGATTTTCTCAACACTGGTTCAGTCACAGCAAAGGCAAGAGCAGCAGCTTTCATTGGTGATCTTTCTATGAGCACTCCAAAGCTCACAGTTGTTCCCAAACCAACTGGTTGCTGGCTTTTCAGATCATCACGTGTTCCCTTATGTCCAGCACATGGGAGTGTATGCAGTGTGAACACCACATTTTGCCTGTTGGAAGGAAAGGCTTTACCTGGCTTGATAGAGCTGTTACGTGGGGAGGTTCATGCAACTGCTTATGAAGCAATACAGACACTTTCCACATTGGTTTTGGAAGACTTTCCTCAAAGGGGAGCTCGTGTCTTGCATGATAAAAATGTAATAAGATCCATATTGGACATTTTGAACTGGGGAACTGATTCTCTAAAGGCAGAAGCTCTAGGACTGTTGGAGAAGGTGTTTGTGTCAAAGGAAATGGTAGAATACTATGGCACAACAGCTAGATCACGTCTAATTGGTCTCACTGGCTCGAATATATATGGGGATGGACACCTTAGGAGAAAGGCTGCCAAGGTACTATCATTGCTTGAACGCTATTCAAAGTCATCATCATCTGCAATCTCTGGAGTTCTGGAGTGA 3039 0.4136 MAAGLELIPIGTILTVVTNQVLKTAHAASDVLIGKESFKALSKHLFDIEPVLKELQLQELNDSQAARVALESLEADVKKANNLVDKYRNRGRFYLLIKCRSIVEEVEQVTRDIGKSLAALSIANTEVLSRISDQVNRLQNEMQRVEFEASQSQIQIVDKLNQGLREQKLDQAFANDMLEEIARAVGVPVEPSEISKELASIKKEKEEASDRKERAECVLLDQIIQLLSRADAARDYEEVERQYFERVKVIERYDSREKYITPLKPFHCSITGAVMGDPVSLCTGTTCERSAIEAWFNDGNRTDPETKEVLEDTTLRSNIPLRQSIEEWRELNYCLVIRSIKENLLSYPDLQESLSQMQALVRENSINKDWISIGGLTDIVISILGSSDDREVKMKILIALKDAVEGNTRNKEKVAESQGWDHIISCLGSDSNISKAAIDLLYELLQEQSGWNQCLCKKLSENRTAVRSLVTLLKNRVNHSAEVAEKMLMKLFELNEETITIAANFGWYKPLVDRMIQGPDSRISMTKAIVNLELNDSNLKLLGKEGVIPPLLEMLSGNIESKDLSLSALVKLAVSHANKGIIAASGGVPLIIDLMFSPRSRTLIIIKCSEIIEKLSSDGDGIDFFVDGEGKQLELDSIITNLLALQQNSSHNICKPALRALLGICKFETGLVKKAILAANGVSLILPLLDDSDSEIRETSIILLFLFSQHEPEGVVEYLFRPRRLEALIGFLENEENDNVQMAAAGLLANLPKSERELTMKLIELGGLDAIISILKTGKMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVDFLNTGSVTAKARAAAFIGDLSMSTPKLTVVPKPTGCWLFRSSRVPLCPAHGSVCSVNTTFCLLEGKALPGLIELLRGEVHATAYEAIQTLSTLVLEDFPQRGARVLHDKNVIRSILDILNWGTDSLKAEALGLLEKVFVSKEMVEYYGTTARSRLIGLTGSNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVLE 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01671 1012 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 1004 - -
Pumo3g01671 1012 Gene3D - 349 504 IPR011989 -
Pumo3g01671 1012 SUPERFAMILY ARM repeat 379 715 IPR016024 -
Pumo3g01671 1012 Coils Coil 198 218 - -
Pumo3g01671 1012 SMART arm_5 711 753 IPR000225 GO:0005515
Pumo3g01671 1012 SMART arm_5 870 911 IPR000225 GO:0005515
Pumo3g01671 1012 SMART arm_5 755 795 IPR000225 GO:0005515
Pumo3g01671 1012 SMART arm_5 669 709 IPR000225 GO:0005515
Pumo3g01671 1012 SMART arm_5 575 617 IPR000225 GO:0005515
Pumo3g01671 1012 SMART arm_5 535 574 IPR000225 GO:0005515
Pumo3g01671 1012 SMART arm_5 798 838 IPR000225 GO:0005515
Pumo3g01671 1012 SMART arm_5 407 446 IPR000225 GO:0005515
Pumo3g01671 1012 Coils Coil 128 155 - -
Pumo3g01671 1012 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 335 IPR013083 -
Pumo3g01671 1012 Gene3D - 8 125 IPR036537 GO:0007166
Pumo3g01671 1012 Coils Coil 63 90 - -
Pumo3g01671 1012 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Pumo3g01671 1012 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Pumo3g01671 1012 CDD RING-Ubox_PUB 264 315 IPR045210 -
Pumo3g01671 1012 CDD MLKL_NTD 11 146 - -
Pumo3g01671 1012 SUPERFAMILY RING/U-box 250 331 - -
Pumo3g01671 1012 Gene3D - 517 844 IPR011989 -
Pumo3g01671 1012 Gene3D - 859 1010 IPR011989 -
Pumo3g01671 1012 Pfam U-box domain 266 330 IPR003613 GO:0004842|GO:0016567
Pumo3g01671 1012 SUPERFAMILY ARM repeat 635 1000 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01671 Pumo-Chr3 25754189 25759782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01671 266 964 U-box Gene Family AT1G76390 28.133 4.70e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01671 - - gmx:100783638 1789.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01671 3 25754189 25759782 Pumo3g01671 3 25754189 25759782 ECH