Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01665 ATGGAAAGCACTGTGACATATGAGACTGATCTCAACCTCAAGGCAACAGAGCTTAGACTGGGGCTACCAGGAACAGAAGAAACTGAGCAAAAAACACTGCCTGCACCTGCTAGAATTACCAACAAAAGGCCATTGACTGAAACAACTTCTGAGGAGTGTGCTTCAAAGGCTCCACATGTGGAAACTGATTCAGCCCCTCCTGCCAAGGCTAAGATAGTGGGGTGGCCACCAATCAGATCCTATAGGAAGAACAGCCTTCAGGAGAATGAGGGTGCTGGGATTTATGTGAAAGTGAGCATGGATGGAGCCCCTTACCTCAGAAAGATAGACTTGAAGGTATATGGAGGCTACACACAGCTCCTCAAAGCTCTAGAAAACATGTTCAAGTTGACCATAGGTGAGTATTCTGAAAAAGAAGGTTATAAGGGATCTGACTATGCACCTACATATGAAGACAAAGACGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGGCTAAGAATCATGAAAGGATCAGAGGCCAGGGGTTTGGGTTGTGCTGTATGA 573 0.4555 MESTVTYETDLNLKATELRLGLPGTEETEQKTLPAPARITNKRPLTETTSEECASKAPHVETDSAPPAKAKIVGWPPIRSYRKNSLQENEGAGIYVKVSMDGAPYLRKIDLKVYGGYTQLLKALENMFKLTIGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCAV 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01665 190 ProSiteProfiles PB1 domain profile. 93 180 IPR000270 GO:0005515
Pumo3g01665 190 FunFam Auxin-responsive protein 88 190 - -
Pumo3g01665 190 Pfam AUX/IAA family 50 187 IPR033389 -
Pumo3g01665 190 SUPERFAMILY CAD & PB1 domains 83 179 - -
Pumo3g01665 190 Gene3D - 87 190 - -
Pumo3g01665 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 184 IPR003311 GO:0005634|GO:0006355
Pumo3g01665 190 MobiDBLite consensus disorder prediction 22 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01665 Pumo-Chr3 25680316 25682340 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01665 96 186 B3 DNA Binding Superfamily AT2G46530 37.363 8.03e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo3g01665 AUX_IAA 2.1e-53 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01665 K14484 - gmx:100527777 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01665 3 25680316 25682340 Pumo3g01665 3 25680316 25682340 ECH