Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01664 ATGGCAACTATGCTGGCAAAGGATCTGAACCTCAAGGAGACTGAGCTTTGCCTCGGTCTGCCTGGTGGTGGCGGTAGTGGTGGTGGCGGCGGTGGCGGTGGCGGTGGCGGTGGCTCTGAGGTGGAAACTCCAAGGGCCACTGGGAAGAGAGGGTTCTCTGAGACTGTTGATCTGAAGCTCAATCTTCAGTCCAAGGAAGATCTGAATGAGAATCTGAAGAATGTCTCAAAGGAGAAGACCCTCCTTAAGGATCCTGCTAAGCCACCAGCTAAGGCTCAAGTGGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCACCGAAGGTTAGCACTGAGGATGTAGCTGAGAAGACAACAAGCAGCACTACTGCTTCTGGGGCATTTGTCAAGGTTTCCATGGATGGAGCACCTTACCTTCGCAAGGTGGACCTCACAATGTACAAAAGCTACAAAGACTTATCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGTAA 648 0.5062 MATMLAKDLNLKETELCLGLPGGGGSGGGGGGGGGGGGSEVETPRATGKRGFSETVDLKLNLQSKEDLNENLKNVSKEKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAPKVSTEDVAEKTTSSTTASGAFVKVSMDGAPYLRKVDLTMYKSYKDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWE 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01664 215 SUPERFAMILY CAD & PB1 domains 120 215 - -
Pumo3g01664 215 Gene3D - 124 215 - -
Pumo3g01664 215 ProSiteProfiles PB1 domain profile. 129 215 IPR000270 GO:0005515
Pumo3g01664 215 MobiDBLite consensus disorder prediction 19 52 - -
Pumo3g01664 215 Pfam AUX/IAA family 46 215 IPR033389 -
Pumo3g01664 215 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 214 IPR003311 GO:0005634|GO:0006355
Pumo3g01664 215 Coils Coil 58 78 - -
Pumo3g01664 215 FunFam Auxin-responsive protein 124 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01664 Pumo-Chr3 25642575 25645162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01664 108 214 B3 DNA Binding Superfamily AT3G61830 32.710 2.97e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo3g01664 AUX_IAA 8.9e-65 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01664 K14484 - gmx:100810762 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01664 3 25642575 25645162 Pumo3g01664 3 25642575 25645162 ECH