Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01653 ATGGGGCAAGGGCAATCCAAAGGCGAGTTGCTCTACCAGCAAGTCAGTTATGGGAACGTCGATGGAATCAAAGCCCTTCACAGAGAAGGTGCAGGCCTAGAGTGGATGGACAAAGATGCAAAGACCCCCTTGATTGTTGCTTGTATGAACCCTCAGCTTTATAATGTTGCCAAAACTTTGATAGAACTTGGAGCCAATGTCAATGCATACCGTCCTGGCTGTCATGGTGGGACTCCATTGCATCATGCAGCTAAAAGGGGCTTTGATAGTATTGTTAAGTTACTTCTTCTGCATGGAGCCAATCCTTTAATGTTGAATGATGATTGTCTAACTGCTCTTGAGGTTGCCAGGGCCAAAGGGCACAGCAATAATGTTCGTACAATTGAGGGTCATCTATGCTTGTTCTCTGGTTGGTTGCGCGAGTTTCATGGACCTGGGTTTCTAGAAGTAGTAGCTCCTCATTTGGTATCAAAAAAAGTTTGGGTGGTTGTTTTACCAGTTGGCTCCCGTACCCTTGCCAAACCTTACAAGTTGGAGCTTGCCATATATTCTAGTTTGCAGGACGCACGACCACGTACAGTTATTGCACTGTGGAAGGCCAATTTACAAGAACCAAAGCTTCACCAGTCTGATCCATCAGTGACAATTGTTGATCAAACTACCAAAACACGCATTAAACTTGGGCCTGCAAATGAGAATGACAAGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCACAGGCAAGTCCAGCATTCTTGCAAACTAATGTGCCTACAGGTCCACCCACAGCGCCACCAGATGCAGAAGACACAGAGTTGGCTATGGCCATCAGTGCATCCCTTCAGTCTGCCATGCAGGAGAGGCCACCCTTTCCTGATACACAACCAAACTTTGATGCAAGCTCTTCAAGCAGTGCAGTGAATACAGGCATTCATGGTTTTCTTGGCACACAAAATCCAAATCCAAATCCAAATACAAGTGATGGTGAGTTTGTACAAGAAGCTAACCCAGGTGGCAATAGCCAGCATCTCCAAAGCCACGTGGATGCCTCTGCTGGGCCTACTGCTAGTGCTTTGGACTTCAATCCATCGGCTCCGCCAATCGCCAATGAGATTCCAACAGATGGCCCCATTCAGTATCCATCAATTGATTCAAGCCCTGTTGATATGGCTTCTCCAGATGTTGTGGAGAAGCTTCAAGAAGGAGAAAAAAATGCTAGTGGAAGTGGTTCATGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAATGAGGTGAAATCAAAGAAATGGGGTTGCCCTGTATGTCGAGCTAAGATAGACCAGGTCATAAAGCTATATCATGTTTGA 1401 0.459 MGQGQSKGELLYQQVSYGNVDGIKALHREGAGLEWMDKDAKTPLIVACMNPQLYNVAKTLIELGANVNAYRPGCHGGTPLHHAAKRGFDSIVKLLLLHGANPLMLNDDCLTALEVARAKGHSNNVRTIEGHLCLFSGWLREFHGPGFLEVVAPHLVSKKVWVVVLPVGSRTLAKPYKLELAIYSSLQDARPRTVIALWKANLQEPKLHQSDPSVTIVDQTTKTRIKLGPANENDKQQLTWFSNACKGIPQASPAFLQTNVPTGPPTAPPDAEDTELAMAISASLQSAMQERPPFPDTQPNFDASSSSSAVNTGIHGFLGTQNPNPNPNTSDGEFVQEANPGGNSQHLQSHVDASAGPTASALDFNPSAPPIANEIPTDGPIQYPSIDSSPVDMASPDVVEKLQEGEKNASGSGSCVICLDAPAEGACIPCGHVAGCMSCLNEVKSKKWGCPVCRAKIDQVIKLYHV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01653 466 ProSiteProfiles Zinc finger RING-type profile. 415 454 IPR001841 -
Pumo3g01653 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 466 IPR013083 -
Pumo3g01653 466 PANTHER ROLLING PEBBLES, ISOFORM B 406 464 - -
Pumo3g01653 466 SUPERFAMILY RING/U-box 414 460 - -
Pumo3g01653 466 SMART ANK_2a 75 104 IPR002110 GO:0005515
Pumo3g01653 466 SMART ANK_2a 39 69 IPR002110 GO:0005515
Pumo3g01653 466 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Pumo3g01653 466 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Pumo3g01653 466 SMART ring_2 415 453 IPR001841 -
Pumo3g01653 466 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Pumo3g01653 466 SUPERFAMILY Ankyrin repeat 10 131 IPR036770 -
Pumo3g01653 466 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Pumo3g01653 466 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Pumo3g01653 466 Pfam Zinc finger, C3HC4 type (RING finger) 413 460 - -
Pumo3g01653 466 CDD RING-HC_XBAT35-like 412 464 - -
Pumo3g01653 466 Gene3D - 3 142 IPR036770 -
Pumo3g01653 466 MobiDBLite consensus disorder prediction 287 387 - -
Pumo3g01653 466 MobiDBLite consensus disorder prediction 287 355 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01653 408 463 C3H Transcription Factor Family AT3G06140 35.088 1.49e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01653 - - gmx:100805974 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01653 3 25469600 25475168 Pumo3g01653 3 25469600 25475168 ECH