Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01648 ATGGATCATGTTATTGGTGGAAAATTCAAGCTTGGGAGGAAGATTGGGAGTGGATCGTTTGGAGAGCTTTACTTAGGTGTTAATGTTCAAAGTGGAGAGGAAGTGGCTGTCAAGCTGGAATCTGTGAAGACCAAGCATCCCCAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGGGGAACTGGTATACCCCATCTAAAATGGTTTGGAGTTGAGGGTGACTACAATGTCATGGTTATTGACCTCCTTGGGCCAAGTCTTGAAGACTTATTTAACTATTGCAATAGGAAATTATCTCTGAAAACAGTTCTGATGCTGGCAGACCAGCTAATAAACAGAGTTGAGTACATGCACTCCAGGGGCTTTCTGCATCGTGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGCCGTAAGGCAAATCAGGCTTTGCAGCCTGTTTTCATTTCATTCCTTGAGGAAAACAAAAACCTCACTGGAACTGCTCGGTATGCAAGTGTTAATACTCATCTGGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCTCTCGGTTATGTGCTCATGTACTTTTTGAGAGGAAGTCTCCCATGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAAAAATATGACAAGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTCTTATGCAAGTCATATCCATTGGAATTCACTTCATACTTCCACTACTGCCGGTCGTTGCGGTTTGAAGATAAGCCTGATTATTCTTATCTTAAGAGACTCTTTCGGGACCTATTCATCCGAGAAGGCTATCAGTTTGATTATGTATTTGATTGGACTATGTTGAAGTATCCACAAATTGGATCCAGTTCTAGAGCCCGACCAAGTGGGAAACCAGTCATAAACCCAGGACAATCAGGAGAGAGAATAGAAAGGCCTTCAGGGGGACCAGAGATTCGGGATAGATTCGCAGGTGCAGTTGAGGCATTTGCAAGGAGGAATGGTTCTGGACTTGGTCTGCTTAGTGATCATTCTAGGCATAGGTCTTCAGATGATGTGCCATCTTCCAAAGACGTGCAAGCTGATTCTGAGAGGCCTCGCAGTTCTTCTCGTAATGGCAGTTCTTCAAAAAAGCCTGTCTTGTCAAGCAGCCGGCCAAGCTCCTCTGGCGAGCCTAGTGAAAGCCGTACTAGCCGATTGGTCTCAAGCAGTGGCCGACTATCAACAACTCAGAGACTTCAACCTGGTTTAGAGTCCAAAACATCATTATCTCGGGCTTCAGCAACAAGAGGAGGTCGTGATGATACACTCAGGAGCTTTGAACTCCTGTCACTTGGTTCAGGAAAAAGGAAATGA 1350 0.4393 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQSGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKLSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQALQPVFISFLEENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPLEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTMLKYPQIGSSSRARPSGKPVINPGQSGERIERPSGGPEIRDRFAGAVEAFARRNGSGLGLLSDHSRHRSSDDVPSSKDVQADSERPRSSSRNGSSSKKPVLSSSRPSSSGEPSESRTSRLVSSSGRLSTTQRLQPGLESKTSLSRASATRGGRDDTLRSFELLSLGSGKRK 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01648 449 Pfam Protein kinase domain 10 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01648 449 Gene3D Transferase(Phosphotransferase) domain 1 1 307 - -
Pumo3g01648 449 PANTHER CASEIN KINASE-RELATED 9 390 - -
Pumo3g01648 449 SMART serkin_6 9 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01648 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Pumo3g01648 449 SUPERFAMILY Protein kinase-like (PK-like) 4 277 IPR011009 -
Pumo3g01648 449 MobiDBLite consensus disorder prediction 364 427 - -
Pumo3g01648 449 FunFam Putative Casein kinase I 1 85 - -
Pumo3g01648 449 MobiDBLite consensus disorder prediction 336 433 - -
Pumo3g01648 449 MobiDBLite consensus disorder prediction 286 316 - -
Pumo3g01648 449 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Pumo3g01648 449 FunFam Casein kinase 1-like protein 1 316 - -
Pumo3g01648 449 ProSiteProfiles Protein kinase domain profile. 9 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g01648 449 MobiDBLite consensus disorder prediction 342 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01648 Pumo-Chr3 25422828 25427427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01648 2 200 Miscellaneous Gene Families AT1G29230 27.700 1.41e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Pumo3g01648 Pkinase 9.5e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01648 K08960 - gmx:100804897 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01648 3 25422828 25427427 Pumo3g01648 3 25422828 25427427 ECH