Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01629 ATGAATACCAACAATATTTTTAACATTAGCTATCACCTGATTGCTTTCGGCTCTGGACAAGACCCTCACCAAAACAACCAAAATGGTTTTAGATGCATATTTTGCAACCTTGTTTTCTCTACTTTGCAAGCACTCATGGCCCATATTGGGTCAGCTCATTTTGCTCAGGAAGACCCTGCTATAAGAGGTCTATATTCACCAAACCATGTCAACTCTCAAAGAGAAATCATTCCCGACCCTTTGCAACCCAATTTTCCTAGGCTAATGGTGATGCAGGAAACAAGAATCTCTATTAACAACATGGTCAGGGTTTTCCAGGCACCACCGGAACAACCTATGGCGATGCCTCAACCTAGAGCAAACTCATTTCCCTATGCTACTCAGCCTTTGGTTGCTGCTTCACAACCATTTCAAGGTCCATCGCAGGCTATGTTGTTTGCCTTGAATAATGTTGCTGAAAGGGCACGATTACTTGCTCCACCAATTCACCACAGAGAGATGGAGGTTTGTCCAATTGATGGAACGAGGCCATATATCAATCTATTGGATAAACCTATAAACAATAATGAGTTTTTTAATCAAGTTATCATTAATGGTGACAACTTGGATCTTGAGTTAAGGCTCTAA 627 0.4115 MNTNNIFNISYHLIAFGSGQDPHQNNQNGFRCIFCNLVFSTLQALMAHIGSAHFAQEDPAIRGLYSPNHVNSQREIIPDPLQPNFPRLMVMQETRISINNMVRVFQAPPEQPMAMPQPRANSFPYATQPLVAASQPFQGPSQAMLFALNNVAERARLLAPPIHHREMEVCPIDGTRPYINLLDKPINNNEFFNQVIINGDNLDLELRL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01629 208 ProSitePatterns Zinc finger C2H2 type domain signature. 32 53 IPR013087 -
Pumo3g01629 208 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 58 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01629 Pumo-Chr3 25251272 25251898 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g01629 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01629 - K24878 pvu:PHAVU_007G056300g 204.912