Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01617 ATGAATTCAGAGAAGCCAGTGAGCCCTGAGATTTTAAGTGAAGAAAATGATCATCATCATGATCAAGAAGAAGCACAAGATGACAGTGGTGGAACCAAACGCTCTTATGAGTGCACATTCTGCAAAAGAGGCTTCACAAACGCTCAAGCTTTAGGGGGCCATATGAATATCCATAGGAAAGACAGGGCCAAGGCCAAGCAATTCACACTTGATGCTTCACCTTCAGTTAACAAATTCAACAGTAGTGATGAATCCATGGCCCTTCCTTTTGTGTCAGAAATTTTAAATCAACCCACAAGGCCTAATTACTCCCTTTTGGAGTCTCAGAGGAACTGTGACACGAACTTTCATCCACCACATGCCTTTTATTATGAGTTTTATAACTCAGGGTCTCGGAATTTGAGTTTGAACCAAGAGCTTCGCGGTGCCAATTTGAGTCTCCAAATTGGTCCAAGTCAAGTTGATGATAATATTCATCAAGTCAGGAGAGGAAATCAGAAAGATAGTGAAGTGGACTTGGAGCTCAGACTTGGCCATGATCCATACTGA 549 0.4208 MNSEKPVSPEILSEENDHHHDQEEAQDDSGGTKRSYECTFCKRGFTNAQALGGHMNIHRKDRAKAKQFTLDASPSVNKFNSSDESMALPFVSEILNQPTRPNYSLLESQRNCDTNFHPPHAFYYEFYNSGSRNLSLNQELRGANLSLQIGPSQVDDNIHQVRRGNQKDSEVDLELRLGHDPY 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01617 182 SMART c2h2final6 36 58 IPR013087 -
Pumo3g01617 182 SUPERFAMILY beta-beta-alpha zinc fingers 33 62 IPR036236 -
Pumo3g01617 182 MobiDBLite consensus disorder prediction 1 33 - -
Pumo3g01617 182 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Pumo3g01617 182 Pfam C2H2-type zinc finger 36 60 - -
Pumo3g01617 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Pumo3g01617 182 PANTHER OS07G0101800 PROTEIN 17 180 - -
Pumo3g01617 182 Gene3D Classic Zinc Finger 13 88 - -
Pumo3g01617 182 MobiDBLite consensus disorder prediction 10 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01617 Pumo-Chr3 25098603 25099151 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01617 27 178 C2H2 Transcription Factor Family AT3G09290 37.821 7.32e-18 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g01617 zf-C2H2_6 1.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01617 - - gmx:102669921 287.73