Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01597 ATGGATTCATCCTCTCTCTTCTTCAACTCACCCTCTTCCGATTTCTCCTCCGAATCTTCCTCTCCGGAAGCGTTCTCGTGGGACGGGAACCTACCGTTCAACGAGAACGACCCGGAGGAGATGCTTCTATACGGCATGATCGCGGGCGCAACCGCCGTGGAGCACTCCGGCGAGAGGGCGAGCTCGGAGGAGAGTGCGGCGGCGAGGAAGGAGAAGTCGTTCCGCGGCGTGCGGCGGCGGCCGTGGGGGAAGTTCGCAGCGGAGATAAGGGACTCCACGCGCCACGGGATGAGGGTCTGGCTCGGGACATTCGACAGCGCCGAAGCCGCGGCTTTGGCTTACGACCAAGCCGCGTTTTCCATGCGCGGCTCAGCCGCGATTCTCAACTTCCCCGTTGAGATCGTCAGAGAGTCCCTTAGGGAGATGAATTACACGCATGACACCAGCGAAGAAGGGTGCTCCCCTGTTGTGGCTCTCAAGAGGAAACACTCCTTGAGAAGGAAAATTAACGTCAAGAAGAGCAGCAAACAAAGTAGTACCGTAGACAATGCTGTCGTGTTTGAAGACCTTGGTCCTGATTACTTGGAACAGTTGTTGATGTCCTCTGATCATCATATTCCTGCCTCCTTCTGA 633 0.5671 MDSSSLFFNSPSSDFSSESSSPEAFSWDGNLPFNENDPEEMLLYGMIAGATAVEHSGERASSEESAAARKEKSFRGVRRRPWGKFAAEIRDSTRHGMRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPVEIVRESLREMNYTHDTSEEGCSPVVALKRKHSLRRKINVKKSSKQSSTVDNAVVFEDLGPDYLEQLLMSSDHHIPASF 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01597 210 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Pumo3g01597 210 MobiDBLite consensus disorder prediction 1 33 - -
Pumo3g01597 210 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Pumo3g01597 210 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Pumo3g01597 210 MobiDBLite consensus disorder prediction 1 27 - -
Pumo3g01597 210 FunFam Ethylene-responsive transcription factor 2 72 133 - -
Pumo3g01597 210 Gene3D AP2/ERF domain 72 133 IPR036955 GO:0003700|GO:0006355
Pumo3g01597 210 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
Pumo3g01597 210 CDD AP2 72 132 IPR001471 GO:0003700|GO:0006355
Pumo3g01597 210 PANTHER DNA-BINDING DOMAIN 28 201 IPR044808 GO:0003700|GO:0009873
Pumo3g01597 210 Pfam AP2 domain 74 123 IPR001471 GO:0003700|GO:0006355
Pumo3g01597 210 SUPERFAMILY DNA-binding domain 74 133 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01597 Pumo-Chr3 24645211 24646285 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01597 31 204 AP2-EREBP Transcription Factor Family AT3G23240 63.736 5.74e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g01597 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01597 K14516 - gmx:100804481 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03830 5 88265760 88266539 Pumo3g01597 3 24645211 24646285 ECH
Pumo5g02850 5 75721557 75722141 Pumo3g01597 3 24645211 24646285 ECH
Pumo3g01597 3 24645211 24646285 Pumo3g01597 3 24645211 24646285 ECH