Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01596 ATGGAGGAGTACCAGAAGGGGAAGCTGCAGGGCAAGGAGGAGGTGCGGTACCGCGGCGTGCGGCGGCGGCCGTGGGGGAAGTACGCAGCGGAGATAAGGGATCCGTCGAAGCAAGGGTCGAGGCTGTGGTTGGGGACATTTGACACTGCTGAAGAAGCTGCTAGAGCTTATGATCGTGCAGCTTTTAACCTAAGGGGTCATCTTGCAATTCTCAATTTTCCTAGTGAGTACTATTCTCAAATAAGGGGTTCACCACCATATCCACCTCATTTAGCATCATCCTCTTCCTCTTCTCATGCCAGTGGAAGCACTTCTTCTGGTGCACAGCAGAGGCATGTTTTCGAGATCCCGTGTTTGGATGATAAGGTGTTGGAGGATCTTCTTGGTCAGTCAGAGGAGCAAAAGAAGAAAAAGAAGGGAGAGTGA 426 0.5141 MEEYQKGKLQGKEEVRYRGVRRRPWGKYAAEIRDPSKQGSRLWLGTFDTAEEAARAYDRAAFNLRGHLAILNFPSEYYSQIRGSPPYPPHLASSSSSSHASGSTSSGAQQRHVFEIPCLDDKVLEDLLGQSEEQKKKKKGE 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01596 141 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Pumo3g01596 141 MobiDBLite consensus disorder prediction 82 111 - -
Pumo3g01596 141 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Pumo3g01596 141 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Pumo3g01596 141 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Pumo3g01596 141 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Pumo3g01596 141 PANTHER DNA-BINDING DOMAIN 12 127 IPR044808 GO:0003700|GO:0009873
Pumo3g01596 141 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Pumo3g01596 141 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Pumo3g01596 141 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Pumo3g01596 141 FunFam Ethylene-responsive transcription factor 2 15 76 - -
Pumo3g01596 141 MobiDBLite consensus disorder prediction 89 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01596 Pumo-Chr3 24595322 24595747 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01596 14 136 AP2-EREBP Transcription Factor Family AT3G23230 69.355 1.91e-49 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g01596 AP2 5.3e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01596 - - gmx:100793703 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01596 3 24595322 24595747 Pumo3g01596 3 24595322 24595747 ECH