Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01594 ATGGATCTTGTAAGCAGAAGATACTTGATTTATGTTTCACAACATGGGTCACAACCACAAGCTTTTTCTCCAATCACAAGTCCAGGGAGTTCAATCTTTCATCCTCATCAGCATTCTTCTAGCACCAGTTTTCCCATCATTGCAATTGCCATAATAGGAATAATGGCCACAGCTTTCTTGCTGGTGAGCTACTACATCTTTGTGATCAAATGCTGCCTCAATTGGCACCGAATTGATGTTCTAAGACGTTTCTCTCCATCTAGAAGGCGTGAAGATCCACCACCAACATACTCACCAGGCACAGATACTCGTGGACTAGATGAGGCACTGATCCGGTTAATCCCAGTGATTCAATACAAAGCACAACAAGGGGATAGAGACTCTGGAGAAACAAGATTCTGTGAATGTGCTGTTTGCTTGAATGAGTTTCAAGAAGATGAGAAGCTGAGGATTATACCAAATTGCAGCCATGTGTTTCACATTGATTGCATAGATGTTTGGCTTCAGAGCAATGCCAATTGCCCTCTTTGTAGAACAAGCATTTCCCTGACAAGCAGATTTCAAATTGATCAGCTTCTCAGCCTAAGGCCTTCTCCTTCCCCTCAGGACCAAACCCCACCTAGGGAAAACCTCATTAGAGGTGATGAAGATTTTGTTGTGATTGAATTGGGTAATGATCATGACAGAAGCCAAAATTTGCAAGAAAGAGGCAGCAGTGCTTTGGAATTACCATTACCAACATGTCTTATTAGTCCTTCTTCACCAAGGAAATTGGAACATGGAAATGTGCAGAAGAAGAAAGCAATGAAACTACAAAAAGTGACAAGCATGGGGGATGAGTGTATTGATATTAGAGCCAAAGATGACCAGTTCACAGTGCAACCAATCAGGAGGTCTTTCTCCATGGACTCATCAGGGGATAGACAGTTCTATTTAGCAGTTCAAGAAGCTCTGAGGCTTCAGAACAGGCAAGTCAATGAGGTCAACTCCATTGAAGGTTGCAGTGGCAGTGGTAGAGCCAAGAGATCATTCTTTTCCTTTGGACATGGAAGTAGATCCAGGAGTTCTGTGCAACCTGTTTCTCTGGACCCCTGA 1095 0.4301 MDLVSRRYLIYVSQHGSQPQAFSPITSPGSSIFHPHQHSSSTSFPIIAIAIIGIMATAFLLVSYYIFVIKCCLNWHRIDVLRRFSPSRRREDPPPTYSPGTDTRGLDEALIRLIPVIQYKAQQGDRDSGETRFCECAVCLNEFQEDEKLRIIPNCSHVFHIDCIDVWLQSNANCPLCRTSISLTSRFQIDQLLSLRPSPSPQDQTPPRENLIRGDEDFVVIELGNDHDRSQNLQERGSSALELPLPTCLISPSSPRKLEHGNVQKKKAMKLQKVTSMGDECIDIRAKDDQFTVQPIRRSFSMDSSGDRQFYLAVQEALRLQNRQVNEVNSIEGCSGSGRAKRSFFSFGHGSRSRSSVQPVSLDP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01594 364 CDD RING-H2_EL5-like 135 178 - -
Pumo3g01594 364 PANTHER RING-H2 FINGER PROTEIN ATL16 30 360 IPR044600 GO:0016567|GO:0016740
Pumo3g01594 364 Pfam Ring finger domain 135 178 IPR001841 -
Pumo3g01594 364 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Pumo3g01594 364 FunFam E3 ubiquitin-protein ligase ATL6 97 184 - -
Pumo3g01594 364 SMART ring_2 136 177 IPR001841 -
Pumo3g01594 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 183 IPR013083 -
Pumo3g01594 364 SUPERFAMILY RING/U-box 135 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01594 Pumo-Chr3 24546941 24548622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01594 35 364 C3H Transcription Factor Family AT1G04360 52.486 1.16e-99 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01594 - - gmx:100775286 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01594 3 24546941 24548622 Pumo3g01594 3 24546941 24548622 ECH